Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01325 ATGGAGACAACGGCAGAGCCAGAAGCGAAGACCTACTGGTGCCACGAATGCGATATGAGCGTGTCCCTCACGCTCCTTCCCTCGCCTTTCCTCTGTCTCCACTGCTACACCTCCTTCCTCGAACTAATGGCCTCTCCCTTCTCCCAAAACAATGTCGAATCACCCTTCTTTGGCGTCGTTTTCCATGACGCACTCTTACTCCTCTCCCCCAAGCCCCTCCCCGCCAAACCCTGCCCTTTCCCCTCCGTCAATGTCACACCCTCGCTCCTTTCCGCGCTCGACCCCAATGGCGTCGTTTTCTGCACTGTGTGCAAAGACCAAATTTCCCTCTTTGACGCCGAGGCCAAACAGTTGCCCTACAAACACCTCTACCATGCCAGTTGCATCACGCCGTGGCTCGACCTCCACGCGTCGTGCCCGTTGAGCAGGCTCCGCCTTGAGGAAGAGGCGGCACAGGAGGAGGAAGACGAAGGTGACGACGTGGTGAGGGAGATCCGGAGGGAGCCTCGAGGTGCCCAAGCGCCTTTGCTATAA 534 0.5824 METTAEPEAKTYWCHECDMSVSLTLLPSPFLCLHCYTSFLELMASPFSQNNVESPFFGVVFHDALLLLSPKPLPAKPCPFPSVNVTPSLLSALDPNGVVFCTVCKDQISLFDAEAKQLPYKHLYHASCITPWLDLHASCPLSRLRLEEEAAQEEEDEGDDVVREIRREPRGAQAPLL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01325 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 169 IPR013083 -
Vian1g01325 177 MobiDBLite consensus disorder prediction 150 177 - -
Vian1g01325 177 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Vian1g01325 177 SUPERFAMILY RING/U-box 97 145 - -
Vian1g01325 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01325 Vian-Chr1 14366859 14367392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01325 5 146 C3H Transcription Factor Family AT3G60080 30.693 1.56e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01325 K11982 - gmx:100775530 200.675