Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01320 ATGGCTTCATCGTCATCTTCATCAAAGAGACATCCCTTGTACCACGGAATCCGTTGCCGGGGAGGAAAGTGGGTCACTGAAATCCGTGAGCCACGTAAGACCAACCGCATATGGTTGGGTACGTTCCTCACTCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTAGCCCTCAAAGGCGGCGAAGCGGTTCTCAACTTCCCGGACTCAGTTGGCAGGTATCCAGTTCCCGCGTCCAAATCCCCTGAGGACATCCGTTCCGCAGCCATTGCTGCAGCAGAACTCATGAAGCCTGAAGCCAGCCACAACAACGTTAATGCAGTAGCCCAGTCTGATAACACAGAGGGTTATGGTTACGGTTACCATAATGTTGTTGGTCCTTCGTATGAAACTGAGTTTGTTGACGAGGAAGCCATATTCTCTATGCCGAGTTTGTTGGTCGACATGGCTGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCGCCCTCTGATTACTGGACCGAAAATTATGCTGGAGAAAATCTGTGGAACTTTTGA 543 0.523 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVGRYPVPASKSPEDIRSAAIAAAELMKPEASHNNVNAVAQSDNTEGYGYGYHNVVGPSYETEFVDEEAIFSMPSLLVDMAEGMLLTPPRMSSPSDYWTENYAGENLWNF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01320 180 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vian1g01320 180 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Vian1g01320 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 179 IPR045277 GO:0003700
Vian1g01320 180 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Vian1g01320 180 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Vian1g01320 180 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Vian1g01320 180 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01320 Vian-Chr1 14297907 14298449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01320 8 180 AP2-EREBP Transcription Factor Family AT5G52020 51.977 1.06e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g01320 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01320 - - vra:106768065 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01320 1 14297907 14298449 Vian1g01320 1 14297907 14298449 ECH
Vian1g01320 1 14297907 14298449 Vian10g00306 10 2777812 2778336 PCT