Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01314 ATGTTGGCTGGGTGTTCTAGTTCGACATTGTTGTCACCGAGCCACAGATTGAGGAGCGAAGCACCAGCACCGTTTCAAGCCTGCCATTTCCCGCGACCTTCCATGAGCACGCAGAGGTTGGATTTGCCATGTTCTACCTTCACCCGCAAAGACGGCTCTTCACGCTCGCAGCCCCTCAGGCCAGTGGGGCTCTCGGTGGAAAAACCCATAGAAGCCAAGACCAGCACATGTTCTCTCAAGCACAACATTCGACTCCCACCTTTGGCCATCACAGCTGCAGCACCATTGGTTGAAGAGTCCATCAAGGACAAGAGTTTGAAAAGGCTCGCGGAGCACGATGAGTCCTTCACCAACGTACCCAAGAGGAAAAAGGGTATCACGGAGTTTGACAATTCCGGTGATAACTTTTGGTTTCAGCCTGGCGTTGAAGGTAACACTTTAGGAGGGCTTAACAACACTTCACTTGCTTTCTCCCCGGAGGAAGAGACGGTTTGTTTTGTTCCTTCTGAACTGGTGTCTCATTCTGCACCTTTTCCCTTAAACCCGTGGCTGGAATCGTGTGTAACAAAGATCACCAACTTCGGTGAGGGTAGCCACCGTCCTCGCCAGCATCACAACGACCATGCAACTGAAGGGTCGGTCTCCAACGCTTCTTCTGAGAGCCAAAGCCTGAGGCTAAACGAGAACGCGTCAGATCATGAAGTGGGAAACGGTTCGGGAAATCCTTACCATCACCACGAGGTGGAGACAGGGGAAGAAGATGATCATCACGGGTTGGAACTCGTTAGCTTGCTCACTGGCTGCGTGGATGCCATTGGATCAAGAAACGTAGCTGCTATAAACCAGTTCATCGCAAAATTAGGTGATCTTGCATCTCCAAGGGGAACCCCCATAAGCCGCATATGCGCTTATTTCACAGAAGCCTTGGCCATCAGAGTAACAAGGCTTTGGCCTCATGTTTTTCACATCACCACCACTTCCCGAGACATGGTGGAGGATGACGAAACCGGAACTGCACTGAGGCTTCTCAACCAGGTGACCCCAATTCCAAAGTATATCCATTTCACATCAAACGAGATGCTGCTGAGGGCGTTTGAAGGAAAAGACAGAGTTCACATAATAGACTTCGACATCAAGCAAGGTCTTCAATGGCCAAGCTTGTTCCAGAGCCTAGCGTCGAGACCACACCCTCCGAGTCACGTGAGAATCACGGGGATAGGAGAATCAAAGCAAGAGCTAAACGAAACCGGAGACAGACTCGCGGGCTTCGCGGAAGCGCTGAACCTCCCCTTCGAGTTCCACCCCGTCGTGGACAGACTCGAAGACGTGAGGCTGTGGATGCTCCACGTGAAGGAGCAGGAAACGGTGGCCGTGAACTGCATTTTGCAGCTGCACAAGACGCTTTACGACGGAAGCGGAGGAGCTTTGAGGGACTTCCTGGGACTGATCCGCAGCACGAATCCGAACGTGGTTGTGGTGGCCGAACAGGAAGCAGAACACAACGAGGCAAGGCTGGAAGCAAGGGTGTGCAAGTCGTTGAAGTATTACTCAGCGTTGTTTGATTGCATCGAGGAGAGTGGGGTGGCGCAAGAGAGTGCAGTGAGGGTTAAGATAGAGGAGATGTACGGCAGGGAGATAAAAAACATGGTGGCATGTGAAGGGAGGGAGAGGTTGGAGAGACACGAGAGTTTCGGGAAGTGGAGGAGGATGCTGGTGGAGCAAGGAGGGTTGAGATGTTTGGGAGTTTCTGAGAGGGAAATGAGTCAGAGCCAGTTGCTGTTGAAGATGTATTCTTGTGAGAATTACAGTGTAAAGAAGGTGGAGATTGAAGGAGCAACAGGGGTTACTCTTAGTTGGCTTGAGCAACCTTTGTACACTGTTTCAGCTTGGGTTCCTGTTGATGTTGCGGGTACATCGTCCTCTTTTTCTCACCCAACTTGA 1941 0.5142 MLAGCSSSTLLSPSHRLRSEAPAPFQACHFPRPSMSTQRLDLPCSTFTRKDGSSRSQPLRPVGLSVEKPIEAKTSTCSLKHNIRLPPLAITAAAPLVEESIKDKSLKRLAEHDESFTNVPKRKKGITEFDNSGDNFWFQPGVEGNTLGGLNNTSLAFSPEEETVCFVPSELVSHSAPFPLNPWLESCVTKITNFGEGSHRPRQHHNDHATEGSVSNASSESQSLRLNENASDHEVGNGSGNPYHHHEVETGEEDDHHGLELVSLLTGCVDAIGSRNVAAINQFIAKLGDLASPRGTPISRICAYFTEALAIRVTRLWPHVFHITTTSRDMVEDDETGTALRLLNQVTPIPKYIHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPHPPSHVRITGIGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEQETVAVNCILQLHKTLYDGSGGALRDFLGLIRSTNPNVVVVAEQEAEHNEARLEARVCKSLKYYSALFDCIEESGVAQESAVRVKIEEMYGREIKNMVACEGRERLERHESFGKWRRMLVEQGGLRCLGVSEREMSQSQLLLKMYSCENYSVKKVEIEGATGVTLSWLEQPLYTVSAWVPVDVAGTSSSFSHPT 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01314 646 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 217 626 IPR005202 -
Vian1g01314 646 MobiDBLite consensus disorder prediction 195 255 - -
Vian1g01314 646 MobiDBLite consensus disorder prediction 210 236 - -
Vian1g01314 646 ProSiteProfiles GRAS family profile. 252 631 IPR005202 -
Vian1g01314 646 Pfam GRAS domain family 261 630 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01314 Vian-Chr1 14180271 14182211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01314 1 631 GRAS Transcription Factor Family AT1G63100 56.041 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g01314 GRAS 2.3e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01314 - - gmx:100786173 1012.29