Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01293 ATGGATATGGTCATAGATGTTGTCTCCGGTGCGCACTTCTCCGGTTGGCAGCCTTCAACGACGTCGTCTTCTTCTCCAACTTCCTCTCATCAGCCCTTCATCATTGGTGTCGCTGGAGGCACTGCATCGGGGAAAACCACTGTGTGCGACATTATCATTCAGCAACTGCAAGATCACAGAGTTGTGCTCGTCTGTCAGGATTCATTCTATCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAACTTCGATCATCCTAATGCATTTGACACAGAGCAACTAGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATATGATTTCAAGCTTCATCAGAGATCTACCGACAAATCTCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGACGTGAGGCTTGCCCGCAGAATAAAACGTGATACAGTTGAAAGGGGTAGAGATATACAATCGGTACTGGAACAGTATGCAAAATGTGTTAAGCCTGCCTATGAAGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATAATACCTCGAGGGGGAGAGAATCGTGTAGCAATTGATTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAGCATAACCTCTGCAAAATATATCCGAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGGGACATATCAAAGCATGATTTCATTTTTTATTCAGATCGGCTAATTCGATTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTAATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCATTATTCGAAGTGGCGAGAGTATGGAAAATGCCTTTCGTGCTTGCTGTAAAGGAATAAAGATTGGAAAAATTCTCATTCATCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTCGGTACTGGTAACACTGCCAGCGAAGCAGTCGAGCTTCTCATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCATACAATGTATTTGTAAACGTTTTCCGCATCTCAAAATTGTCACATCGGAGATCGAAGAAGGATTAAATGACCAGCTCCAGGTCATACCAGTGCTGGGTGAATTTGGAGACCGTTACTTTGGTACGGACGACTCATAG 1362 0.4251 MDMVIDVVSGAHFSGWQPSTTSSSSPTSSHQPFIIGVAGGTASGKTTVCDIIIQQLQDHRVVLVCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLGQLKSGQSVQIPIYDFKLHQRSTDKSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIKRDTVERGRDIQSVLEQYAKCVKPAYEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENAFRACCKGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNTASEAVELLIKKGVPESQIIFLNLISAPEGIQCICKRFPHLKIVTSEIEEGLNDQLQVIPVLGEFGDRYFGTDDS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01293 453 Pfam Phosphoribulokinase / Uridine kinase family 34 220 IPR006083 GO:0005524|GO:0016301
Vian1g01293 453 FunFam Uridine kinase 29 235 - -
Vian1g01293 453 Pfam Uracil phosphoribosyltransferase 250 450 - -
Vian1g01293 453 Gene3D - 236 450 IPR029057 -
Vian1g01293 453 ProSiteProfiles UvrC family, homology region profile. 138 221 IPR001162 GO:0009381
Vian1g01293 453 SUPERFAMILY PRTase-like 235 451 IPR029057 -
Vian1g01293 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 225 IPR027417 -
Vian1g01293 453 Gene3D - 28 235 IPR027417 -
Vian1g01293 453 FunFam Uridine kinase 236 450 - -
Vian1g01293 453 CDD UMPK 34 232 IPR000764 -
Vian1g01293 453 CDD PRTases_typeI 309 423 IPR000836 -
Vian1g01293 453 PRINTS Uridine kinase signature 107 122 - -
Vian1g01293 453 PRINTS Uridine kinase signature 200 213 - -
Vian1g01293 453 PRINTS Uridine kinase signature 62 73 - -
Vian1g01293 453 PRINTS Uridine kinase signature 164 174 - -
Vian1g01293 453 PRINTS Uridine kinase signature 32 49 - -
Vian1g01293 453 PRINTS Uridine kinase signature 178 189 - -
Vian1g01293 453 PANTHER URIDINE KINASE 26 361 - -
Vian1g01293 453 NCBIfam uridine kinase 31 232 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01293 Vian-Chr1 13957771 13962792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01293 1 452 PRT Gene Family AT3G27190 73.319 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01293 K00876 - gmx:100816209 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01293 1 13957771 13962792 Vian1g01293 1 13957771 13962792 ECH