Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01288 ATGGCCTCTTGCACTTCCCTTTCTCTTTGTTCTCACATCTTCTGTTGCCGCCACCGGCCTTACCCCACGCGCCGTTCTCTTTCTTGCTCTCTCTCCTCTTCTTCCATCCCCGATACGGATGGACCTAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTTAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGACACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCACTAGATTCTCATACGCCAATTTTTGCATCATCCTTTACGATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCGTCCCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATTGAGCCTATCACAGTTACTCATTCTATTCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAAACCGTTAGATGGAAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTTTCTAAAGAAGGAGTCACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCGCTATTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTAAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAGGATATTGACGCTTATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTATCAAGCTGACAAAGGAGGATATTGTGTTGTATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGCCATGGGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTTTACCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTCACCTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGTGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCCCTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAGCGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGACACCGACATTGAGAAAAGTGCTGGATGGACATGGGAAAGAAAATCAGAAAACCAAAACACAAATAAGAGATCGAATTGATGTAGGGGGTATACTACCTATTGAAGACAATGCTATCTCAAGTGGAGTTGAGGATGATTTGTCTGATGCGGAGGTTTCAAACGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTTGAAGGATGGTAGTTCTGAAGACACCGAAGAATGTAATTCCGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGAAGAAGTTAAGAAGCTGATTGGCATGCGTGGGGAGTTGAATGACCGATTTCAAGTTGTTAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCCGGCCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATACGAGGAGGTGAAGAATGAGAAAAATGGCAAGAAATGGCCGTATCTTGAGCAAATGGAAAGGATTCTGTCCGATAGCGAGACACTGGCATCTAAATGA 2604 0.4174 MASCTSLSLCSHIFCCRHRPYPTRRSLSCSLSSSSIPDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDEKPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSIKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFTSLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGTPTLRKVLDGHGKENQKTKTQIRDRIDVGGILPIEDNAISSGVEDDLSDAEVSNDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPLKDGSSEDTEECNSVNTSNSEPKSSKSAKRNKWKHEEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEEVKNEKNGKKWPYLEQMERILSDSETLASK 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01288 867 SMART Lactamase_B_5a 91 288 IPR001279 -
Vian1g01288 867 Gene3D - 280 430 IPR042173 -
Vian1g01288 867 MobiDBLite consensus disorder prediction 41 59 - -
Vian1g01288 867 MobiDBLite consensus disorder prediction 754 768 - -
Vian1g01288 867 CDD RNaseJ_MBL-fold 82 493 - -
Vian1g01288 867 MobiDBLite consensus disorder prediction 732 776 - -
Vian1g01288 867 MobiDBLite consensus disorder prediction 32 59 - -
Vian1g01288 867 Pfam Myb/SANT-like DNA-binding domain 774 857 IPR044822 -
Vian1g01288 867 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Vian1g01288 867 Gene3D - 83 495 IPR036866 -
Vian1g01288 867 ProSiteProfiles Myb-like domain profile. 769 833 IPR001005 -
Vian1g01288 867 CDD GT1 775 840 - -
Vian1g01288 867 Gene3D - 777 838 - -
Vian1g01288 867 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Vian1g01288 867 PANTHER RIBONUCLEASE J 1 867 - -
Vian1g01288 867 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01288 Vian-Chr1 13898472 13917304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01288 776 859 Trihelix Transcription Factor Family AT2G38250 35.632 3.27e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian1g01288 Lactamase_B_2 1.4e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01288 - - gmx:100814619 1561.2