Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01286 ATGGATGAATCTTTGCCAGATTCTCGAAGCTATAGACAGGATGTGGAGGAAGAGAAGGATGTGCAAGAATGGACTATCAGAAAGTCAAGATGGGCTACTGATGATGGTCCCTCACCCATGGCTGCTGATGATAAATTCAATCATGTCAAAGGCAGCTCCAGTCCTGAAATTGGTGAATTCCATCGCGGTGGATCTTCAGAAAGCACCGTCACTAGATCGTCAGGAAGCACGGGGAGAGATCAATATCTTGGACTTTCTACTGATGACGCCGATTCTGAAAGGGATTTCCATATAGACCCCGTGGTCGATGTTGAGGGACCAAGTGACGTTGGTGATTGTCCATCGGATTCTGAAGAGAGTGATGGATTGAAGCAAGTGCAGAGAAATATAAATATGCTTCACAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAAACTGGAGAATTAGTCGCGTTGAAGAAGGTGAAGATGAATATAGAGAGGGATGGCTTTCCGATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAACCATCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAATACATGGAGTATGACCTCAAGGGAATGATGGAGGTTAAGAAACAGCCTTTTAGCATTAGCGAAATTAAATCCTTGGTAAAGCAACTTCTCGAAGGTGTCAAGTATCTTCATGATAACTGGGTTATCCATAGGGACTTGAAGTCATCAAACATTCTGCTGAACCATGACGGGGAGCTTAAAATATGCGATTTTGGGTTGTCGAGGCAGTATGGAAGCCCTCTGAAGCCATATACTCCTGTTGTGGTTACACTGTGGTACAGAGCACCTGAACTTTTGTTGGGTGCTAAAGAATATTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTTCCAAGCAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATCAGATTTTTCGAACCCTGGGTACACCTGATGAGAAAATTTGGCCTGGATTATCCAAATTACCTGGGGCTAAAGCAAAATTTGTCAAGCAACCGTTTAATATGTTAAGGAAGAAGTTTCCAGCTGCATCATTTACCGGTTTTCCAGTTTTATCGGAGCTGGGATTTGACTTGTTGAAGAAGCTTTTAACTTATGATCCCGAAGAGAGGATAACTGCTGAAGATGCTCTCCTTCATGATTGGTTCTATGAAGCCCCTCCTCCCAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGAGGTGCTAG 1356 0.4204 MDESLPDSRSYRQDVEEEKDVQEWTIRKSRWATDDGPSPMAADDKFNHVKGSSSPEIGEFHRGGSSESTVTRSSGSTGRDQYLGLSTDDADSERDFHIDPVVDVEGPSDVGDCPSDSEESDGLKQVQRNINMLHSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGMMEVKKQPFSISEIKSLVKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELISKQPLFRGKSELEQLDQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGFPVLSELGFDLLKKLLTYDPEERITAEDALLHDWFYEAPPPKSDFKPIFPSWRC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01286 451 FunFam cyclin-dependent kinase G-2 isoform X1 127 223 - -
Vian1g01286 451 ProSiteProfiles Protein kinase domain profile. 142 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01286 451 MobiDBLite consensus disorder prediction 86 102 - -
Vian1g01286 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vian1g01286 451 Gene3D Phosphorylase Kinase; domain 1 125 223 - -
Vian1g01286 451 CDD STKc_CDC2L1 136 432 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vian1g01286 451 SUPERFAMILY Protein kinase-like (PK-like) 136 437 IPR011009 -
Vian1g01286 451 MobiDBLite consensus disorder prediction 1 122 - -
Vian1g01286 451 MobiDBLite consensus disorder prediction 64 83 - -
Vian1g01286 451 PANTHER CELL DIVISION PROTEIN KINASE 141 436 - -
Vian1g01286 451 SMART serkin_6 142 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01286 451 Pfam Protein kinase domain 142 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01286 451 FunFam Cyclin-dependent kinase G-2 224 451 - -
Vian1g01286 451 Gene3D Transferase(Phosphotransferase) domain 1 224 443 - -
Vian1g01286 451 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01286 Vian-Chr1 13880768 13882567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01286 137 438 Core Cell Cycle Gene Families AT5G10270 44.969 7.14e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vian1g01286 Pkinase 6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01286 K08818 - gmx:100788840 770