Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01281 ATGGCAACCGTTTCGCGCTTGTTCGTGATCCCAGCGGCGAGGCCCGTTCTCGCCAAAACCATATTCTTCATGTCCTCTTTCTCAGCTCGCACGCTCGAACCGTGCGAACCGTCACCTTCCCCTGCGCGCTCCGAGGAAGAATCGCGAAACGTGAGGGTTTGGGCATGGTGGGACTTCAAGAACTGCCACGTGCCCCCGGATTTCGACGCTTCCAAAGTCGCACCGGCAATAATGGAGGCAGTGAGAGCAAACGGAATCAAAGGACCTCTCAACATCACCGCTTTCGGCGACGTTCAACAACTCCGCAGGGCTCATCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCATCCACGTCTCTGACGAGGGAAGAAACAGTGCCGACATTCTCGTTGATCTAATGTATTGGGTTTCTCAGAACCCTCCGCCGGCGCACATATTTCTGATATCCGGCGATAGAAACTTCGCTGGCACGTTACACCGCTTGAGAATGAGTAATTACAATATATTGCTCGCTACGCCGGAGAAAACTCCCAGTGTTCTCCACAGTGCTGCCACGATAGCCTGGATGTGGGATTCGTTGCTCAACGGAGAAAATATTACTGGAAAGGTCCTCAACCACCCTCCTGATGGGCCTCTTGGCTCTTGGTATGGAAACTACAAGGAACCGGTGACGGTGGCGGATCTGGCGACGGAGGAACCGGTCACAGTTGCAGCTCTGCAGGCTTCCTCGTTGCCCAATGTGGAGGTCTGCCCTTCTAGGAGCACGGTTCCTAAGTCGGTTTTGAGTAAGATTTGCAATATTTTGAGTTTGCATCCCGAAGGAATGGAGGTTGCTCATCTTTGCGCTGAGTTGATGAAAATTGATGCGTGTTTGGATAAGAATTGGTATGGACATAAAAAGTTTTCCCGCTTTCTGTTGTCGTTGCCACAGGTAGATCTTCGGTCTATTGGTGATGGTTCTCTTCGTGTACATTTGGTTCCTGTGCAATCCATGGAACCATGTAAGATCAGCTCTTTGGAATCAACAGTTTCTGATGCTACGAATGAGGAGAAACGATGTGCAGCGGCACCAAAAGTAAATGGCGAGGGTAAAAGTAAGGTTAGGGATGCTGACAAGAAATTGTCAAATGCTACGAATGAGGAGAAACGATGTGCAGCGGCATCAAAGGTAAATGGCGAGGCTAAAAGTAAGGTTAGGGATGCTGACAGGAAATTGGCAAATGCTACGAATGAGGAGAAACGATGTGCTGCGGCATCAAAGGTAAATGGCGAGGCTAAAAGTAAGGTTAGGGATGCTGACAGGAAATTGGCAAATGCTACGAATGAGGAGAAACGATGTGCAGCGGCATCAAAGGTAAATGGCGAGGCTAAAAGTAAGGTTAGGGATGCTGACAGGAAATTGTCAAATGCTGAAAGGAGTATGTGGGACTATTTAAAATCAGTACAATCGGGGTCTTCAAAAGGGAAACCTGTTGAGGAAAATGAGTTGCGGAAGTCTGCTGTGGCTTGTGACAGGTTTGTGGATGTGGCTAATGCTCCACAGTCAGAAACTGAACTGCCACATGAGGATAGCAAAGATTCCAAAACTAAGATGGATACCCTAAAAAAGAGTTCTAAAAAATTGACTGATATGAACACTGTTAGGTCTAAAGTTGCTGGTATGGAAAAACATACTACTAAAGATAATCTCTCTGCTGGAAATGATCAATCGATGGTGGAAAACAATGTTATGGCTAATTATGAGTCTGGAAATTTTGAAGCAAAGAATGAATGTGAGAATCGAACTAGTAAGGAGGTTGACGAAGTTTTTCCAAGCCTATCTACACCAATTGATTGCTCTGAGGCTGCCCAAAAGCCTGGCGGAAGCGCTGAAACTAATAAAACAAGTCCAACACTGTTTCACTGGATTAAACGGTGGTGGCCATTTGGGAAAAACAATGAAAAATATGATGATTTGACGGCTCATCAAAGGGAAGGAGTTAGTCATGTTGAGGATTCCAAGTTATCTGAACTGGAGCAGACTGTTAGTCAATCTGAAGAGGTCAAATCATCTGAACTGGATCACACTGTAACTCAATCTGAAGAGCCCAAGCTACCAGAACCGAATCAGAATGCTGGTCATTCCGGAAAGCCTGAGTTAAAATATGATGATTTGACGGCTCATCAAAGGGAGGGAGTTAGTCATGTTGAGGATTCCAAGTTATCTGAACTGGTGCAAACTGTTAGTCAATCTGAAGAGGTCAAATCATCTGAACTGGATCGCACTGTAAGTCAATCTGAAGAGCCCAAGCTACCAGAACTGAATCAGAATGTTGGTCATTCCGGAAAGCCTGAGGAGGATGTGGCGCAAAGGTTACAAAATGTAGGACCCCTGCTTCTCAGATCACTCCCCAAAAAAGATATCCTTCAATTGGTTGATATGTTAATAGCAGACAAAAAATGGTTGGAGGAAAGGCCGTCCCAAGCATTTCCTTTTAAGCTAACTCAGCCAGTTCATAAGAATTTATCGGTGGACCAATCCCGTGGTGGCAATGGTTTGAGATCTATCTTTCTACGCAGATCATCACAATCTCTAGAACATGATGTGGGGAAACACAATCAGAGTGTTCCTCATACACCAATTTCTGCAGCGGCTGTTGAAACAAAACATTTTGAGAGATCTAGAAATGATATATTGGATGACTGCCAGAAACTTGTTAATGAGATATTAAGGGAACACCCAGAGGGATATAATATTGGTGCTTTCCGAAGACTATTTGTTGATAAGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTATCAAAAATTGGTAGCCTTGCTACAGATAATGCCTGGGGTTAAATTTGAGTCTACTTACATTTATCCTTCTGTTCCTATTGTATGTGATTCTGATTTGGATACTTCTATCCTCAAAACTAAAGCAACCGCTGATAGTCATGCAGTCTCCAACTCAGATAGCGAATTATCTGAGTCAACCCTGAAAGATGATGACATGGAATCTGAATGGGAGGAGTTGGGTCCTGTTTCTATCAAAAATTTTGACAAGAGTGGTTTGGGTTATGAACTTGTTGTATCAGATGACGATACTTCTGCATCTGAAGGAGACCACTCTTATTTAACTCAATCTGAAGAGCAGAGGAAATCAATTTGTAATGAACGGGACAGTTCGTTTTGGCAAACTATGGATTTGTGGCACAGCTGCAAGGAAGGAGAGAATGGTGTCAAGAAGTCAGATAATGTTGACAGCTTGAGTGTTTCTGTGGCTCATATTTTAAATTCATCCCCTGACCCAACCATTGGTTCCCCTTCCAAAACATCAAATTACAGAGATAAGCAAAGGTCTCACAAGAACTATTCTTTCGTTGTTGATCAAGTCTTACCTGACAAGGACAAGCTGATTGGTGACTTCAAGAAAACTGATGAGTCAAAGATGCAAAAACAGAGTAGTTCCTGCTGCAAGTAG 3468 0.4432 MATVSRLFVIPAARPVLAKTIFFMSSFSARTLEPCEPSPSPARSEEESRNVRVWAWWDFKNCHVPPDFDASKVAPAIMEAVRANGIKGPLNITAFGDVQQLRRAHQEALAYTGVRFIHVSDEGRNSADILVDLMYWVSQNPPPAHIFLISGDRNFAGTLHRLRMSNYNILLATPEKTPSVLHSAATIAWMWDSLLNGENITGKVLNHPPDGPLGSWYGNYKEPVTVADLATEEPVTVAALQASSLPNVEVCPSRSTVPKSVLSKICNILSLHPEGMEVAHLCAELMKIDACLDKNWYGHKKFSRFLLSLPQVDLRSIGDGSLRVHLVPVQSMEPCKISSLESTVSDATNEEKRCAAAPKVNGEGKSKVRDADKKLSNATNEEKRCAAASKVNGEAKSKVRDADRKLANATNEEKRCAAASKVNGEAKSKVRDADRKLANATNEEKRCAAASKVNGEAKSKVRDADRKLSNAERSMWDYLKSVQSGSSKGKPVEENELRKSAVACDRFVDVANAPQSETELPHEDSKDSKTKMDTLKKSSKKLTDMNTVRSKVAGMEKHTTKDNLSAGNDQSMVENNVMANYESGNFEAKNECENRTSKEVDEVFPSLSTPIDCSEAAQKPGGSAETNKTSPTLFHWIKRWWPFGKNNEKYDDLTAHQREGVSHVEDSKLSELEQTVSQSEEVKSSELDHTVTQSEEPKLPEPNQNAGHSGKPELKYDDLTAHQREGVSHVEDSKLSELVQTVSQSEEVKSSELDRTVSQSEEPKLPELNQNVGHSGKPEEDVAQRLQNVGPLLLRSLPKKDILQLVDMLIADKKWLEERPSQAFPFKLTQPVHKNLSVDQSRGGNGLRSIFLRRSSQSLEHDVGKHNQSVPHTPISAAAVETKHFERSRNDILDDCQKLVNEILREHPEGYNIGAFRRLFVDKYGYHLDLQKLGYQKLVALLQIMPGVKFESTYIYPSVPIVCDSDLDTSILKTKATADSHAVSNSDSELSESTLKDDDMESEWEELGPVSIKNFDKSGLGYELVVSDDDTSASEGDHSYLTQSEEQRKSICNERDSSFWQTMDLWHSCKEGENGVKKSDNVDSLSVSVAHILNSSPDPTIGSPSKTSNYRDKQRSHKNYSFVVDQVLPDKDKLIGDFKKTDESKMQKQSSSCCK 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01281 1155 MobiDBLite consensus disorder prediction 1095 1109 - -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 982 1003 - -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 661 779 - -
Vian1g01281 1155 Coils Coil 423 443 - -
Vian1g01281 1155 Coils Coil 454 474 - -
Vian1g01281 1155 CDD PIN_limkain_b1_N_like 52 174 - -
Vian1g01281 1155 PANTHER LIMKAIN B LKAP 41 902 IPR024768 GO:0005777|GO:0010468
Vian1g01281 1155 MobiDBLite consensus disorder prediction 359 379 - -
Vian1g01281 1155 CDD LOTUS 893 948 - -
Vian1g01281 1155 Gene3D - 887 954 IPR041966 -
Vian1g01281 1155 Pfam OST-HTH/LOTUS domain 259 322 IPR025605 -
Vian1g01281 1155 Pfam OST-HTH/LOTUS domain 893 947 IPR025605 -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 711 732 - -
Vian1g01281 1155 ProSiteProfiles OST-type HTH domain profile. 892 966 IPR025605 -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 449 468 - -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 519 544 - -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 1095 1117 - -
Vian1g01281 1155 Pfam NYN domain 52 185 IPR021139 GO:0004540
Vian1g01281 1155 Coils Coil 392 412 - -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 589 630 - -
Vian1g01281 1155 ProSiteProfiles OST-type HTH domain profile. 257 328 IPR025605 -
Vian1g01281 1155 MobiDBLite consensus disorder prediction 510 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01281 Vian-Chr1 13828494 13832390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01281 55 197 C2H2 Transcription Factor Family AT5G61190 41.379 1.12e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01281 - - var:108320919 2178.67