Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01273 ATGGATTCCCTCAAGGCACTTGAGGCTGATATCCAGCATGCCAATGTGCTGGCAGCTTCCATTCCCAGGGGGAATGGCGAGGATTACCTTCAAATGAACCATTTTAATCTTTTCCGTGTGCTTGTGTATAAGGTGCACACTAACGGAAAGTCAGATATGTATTCAAGTGGAAGGAAAGCAACCATAAGGGAGTTCTACAGTGTTATATTACCTTCACTCCAACGACTTCATGGTGATTTGGTAGAAGCTAACATTGGTGAAGAAAATGATGACAACACTGAGACGATAACCAGTAAGGACGATAAGAGGCTGGCTTCAGATTATGAGTTGGAGAGAGACCATGAGTGTGGCATTTGCTTTGAATCCACCACCAAAATGGTTTTGCCTAAGTGCTGCCATGCTATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCCGGGGAAGCTTAAAGAGAGTTAATTCGGGGGATTTGTGGGTTCTAACATGTAGTAGAGATGTGATTGATATGCAAACCATAAACAGAGAAGATGCGTTGCGTCTTTATCTCTTTGTGAATAATCTTCCCCAATACACTCCTGATGCTGTTTTCCTTATGTACTACGAGTACTTATTTTAG 639 0.4178 MDSLKALEADIQHANVLAASIPRGNGEDYLQMNHFNLFRVLVYKVHTNGKSDMYSSGRKATIREFYSVILPSLQRLHGDLVEANIGEENDDNTETITSKDDKRLASDYELERDHECGICFESTTKMVLPKCCHAMCINCYNDWNTRSESCPFCRGSLKRVNSGDLWVLTCSRDVIDMQTINREDALRLYLFVNNLPQYTPDAVFLMYYEYLF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01273 212 SMART ring_2 116 153 IPR001841 -
Vian1g01273 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 163 IPR013083 -
Vian1g01273 212 ProSiteProfiles Zinc finger RING-type profile. 116 154 IPR001841 -
Vian1g01273 212 Pfam Zinc finger, C3HC4 type (RING finger) 113 159 - -
Vian1g01273 212 SUPERFAMILY RING/U-box 104 159 - -
Vian1g01273 212 PANTHER RING FINGER PROTEIN 41, 151 36 210 - -
Vian1g01273 212 FunFam RING/U-box superfamily protein 97 163 - -
Vian1g01273 212 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01273 Vian-Chr1 13767577 13768673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01273 103 192 C3H Transcription Factor Family AT2G20030 34.021 1.28e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01273 - - qsu:112000041 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01273 1 13767577 13768673 Vian1g01273 1 13767577 13768673 ECH