Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01270 ATGGCAGCTTCCGAGGAAGTACTGCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGCCCAACCGAGGCGGAGTTTCAAAACCCGATCGCCTATATCTTTAAAATTGAGAAAGAAGCCTCTCAGTACGGAATCTGCAAGATCATTCCCCCGCTTCCCCCTTCTCCTAAGAAAACAGCAACTGCCAACCTCACGCGCTCCCAGCCCACCTTTACCACGCGTCAACAGCAGATCGGTTTCTGCCCCCGACGTGTGCAGCCAGTGCGCCGCCGCGTATGGTACAGCGGTCATCACTACTCTCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAGCAAACCCAAACCCTCCCCTCTCGAACTCGAAACGCTCTACTGGAAAGCCACTTTAGACAAACCCTTCTCTGTCGAATACGCTAACGACATCCCTGGCTCCGCGTTTAGTCCCCTCCGTGCTTTGCGCGATGTCGATCACGTTGGTGACACCCCATGGAATATGAGGACGGTTTCGCGGGGGAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCCGGCGTGACGTCACCCATGGTCTACGTGGCCATGTTGTTCAGCTGGTTCGCGTGGCATGTGGAGGATCACGACTTGCATAGCTTGAATTACCTCCATTTCGGCGCTCCCAAGACTTGGTATGGCGTGCCTAAGGATGCTGCCGTCGCATTCGAGGAGGTTGTCAGAGTTCATGGCTACGGTGGCGAGATCAATCCTCTTGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCACCGGAGGTTTTTGTTGGTGCGGGTGTTCCCTGCTGCAGGCTGGTTCAAAATGCTGGGGAATTTATAGTGACGTTTCCAAGAGCTTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAAGCGGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGAAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTGTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGGAGTTCTCGGCTTAAATATAAGAGAAATGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGATCTGATATAGTACTTCTCCCTCGTAGCTCTTCTGATTTTTCTGTTTGCTCAAAATTACGCGTTGGGTCACGACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACAATTACGAGGGAATGGATTCCTCAGATTTTATTTCTAATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAAAGTTTTTATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTCTGCCATTAAGTTCAAATGGGAACATATACACTTCAAGTTCAAAAACACTGCAACGAGACAGTGAAAAGGAAACAGATCAAGGAGATGGATTGTCAGATCATAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTGCAGCCCAGAGAACCAGCAGCTACGTACCTTATGTCGGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAATTGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGGATGGAGTAAACAAAATGCCCAACATGATTCAAATGGTGTTCCCATTCAATCTGTTAAGCACCATGCACAGATTGCTGATCAAAATTATGAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACAGCTCTTGCATTATTGGCATCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCGGGGGGGATTAGATATTGCACTTGATGATGATGAATTGAATGCAGTAAACCATTCAACCTCTAATGGATCTCAGGAGATGTCTAGTATGCCTTCTCATTTTCAAGATCCCCATACTAGTCCCATGGTTAGAGTCATTAGACTTAATAAAGGAGATGATATTCATTCAAGAAGAAAAGACAATTATGAGTATTATATGCATAAGAGACTTGAGCAAATTATGACTCCTTTTGACTATTCTGTTAAGTCAGAAGATCATGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCCCACCTTGAATTGTTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTTTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGTCCAATCGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGGTTATACGTGGAAGAATACTGTATACAGGCAGGCCAACAGGGAAGATGAAGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGATTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCTCCAGGAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCATCAAGCAGAAAAAGCTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCTCTTTTAGCCAAAAGAGATTCTGAAGATGTTGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTGAGAGATCAGAAAGCAACCACAAAAGCAATACCTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTGAGAAAGGAGGAATCTGGGAAGAAAGCTTTGTTGAGAGAGGTTGGCTTTCAGATAACTCCATTGAAGATAAATCCAATAAATATCAAAGGAGGATTATTGGGGGTAAGCGCTCCAGGCATATTGAGAGAGATGATACTGCTTCGGAAGGGGATTATTCTCCTCTGCCACTTCATAGAAAGCCTATAACCAAGCATTCAGAATCTAGTGAAGATGATGCAATGTCTGATGATTTTCTGGATGATGATTCTTGTATACAGCATCGGGGGAGGGCTAACACCAACAAAGCTAAATTAATTGACAGTGATGTGTTTTCAGATGATACAATGGACTATGGTTCTGATTGGTTGCGGAGGGGGGAGCTTAGCAATGAGCAAGATGCTATTTCAGACGATTCATTGAGTGCTGGTTCTCTTCAGCTGCACGGAAAGACTCCCAAAGGCAAGTATGATAAATACATTACTGAAGAAGACGTGATTTCTGATGACCAAAGGGAGGTTTGTTTATGGAAGCAGAGAGGGAAGATATCTAAAGGCAGACAAAGATCACTTTCTGCTAAAAATGAAGATGGTCTGAAGCACCATAGGCAGAAGCAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACTTTGCAGTAGAGAATATTACATCTGATGACCAAATGGAGGGTCGGTTTTTCAAGTGTCAAAGAAGGATTCCTAAAAACAAGCAAGTGAAGTTAATCGAGGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATGACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATGTTATGGATGACTTGGCAGAAAATAATTTTCATATACTGTATAGAACTCGTAAAAGGAAGCAAGTTAAAGGTATGGACGAGGACAATATAGATTCAGATGATCAAATGGATGATATTTTGCATCAGCAGCACAAAAGAACTCTTCAAAGTAAGCAGTCTAAAGCACAGATTCTTCAACAAACGAAACAAACTAATCCACGCCATGCAAGAAACAAGACATCCCATCCTGCCAAACAGAAACAAGGTGTTCATACGCAAATGAAATCAAAGGCTGCTCGGCAGACAAAGAATCAATCTGGTAACTCCAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGACCTCGCACGCGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCAGAAGGAAAATTGAAAGAAAAGAGAACCAAAAGGGAAAAGGAGAAGAATACAACTGCTGCAAAGGTTTTAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAATGTGACATCGAGGGATGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACACAAGAGAAATATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAAAAGAATTGTTGA 4611 0.4361 MAASEEVLPWLKSLPVAPEYRPTEAEFQNPIAYIFKIEKEASQYGICKIIPPLPPSPKKTATANLTRSQPTFTTRQQQIGFCPRRVQPVRRRVWYSGHHYSLREFEAKAKAFHKTYLKKSKPKPSPLELETLYWKATLDKPFSVEYANDIPGSAFSPLRALRDVDHVGDTPWNMRTVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPKDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFIVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSDIVLLPRSSSDFSVCSKLRVGSRQLKVNPDFSLNVYNYEGMDSSDFISNDLMFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPLSSNGNIYTSSSKTLQRDSEKETDQGDGLSDHRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFSIAHEDASIPKPRTYTGWSKQNAQHDSNGVPIQSVKHHAQIADQNYEEALNSGREKGNTALALLASAYGNSSDSEEDRGGLDIALDDDELNAVNHSTSNGSQEMSSMPSHFQDPHTSPMVRVIRLNKGDDIHSRRKDNYEYYMHKRLEQIMTPFDYSVKSEDHDNTSGVAFRNTRAVPHPTLNCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIGYTWKNTVYRQANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYKAFGQSSPGSSPTEPKVYQRRTIKQKKLVAGKWCGKVWMSNQVHPLLAKRDSEDVEDETSLHGWPLPDEKIERSESNHKSNTSTRKSGKKWKKSVEKGGIWEESFVERGWLSDNSIEDKSNKYQRRIIGGKRSRHIERDDTASEGDYSPLPLHRKPITKHSESSEDDAMSDDFLDDDSCIQHRGRANTNKAKLIDSDVFSDDTMDYGSDWLRRGELSNEQDAISDDSLSAGSLQLHGKTPKGKYDKYITEEDVISDDQREVCLWKQRGKISKGRQRSLSAKNEDGLKHHRQKQQQRNLRSRQDKHFAVENITSDDQMEGRFFKCQRRIPKNKQVKLIEEEDVMSDDQLKDDFQKPQRSTRRSRQNKYNDKDVMDDLAENNFHILYRTRKRKQVKGMDEDNIDSDDQMDDILHQQHKRTLQSKQSKAQILQQTKQTNPRHARNKTSHPAKQKQGVHTQMKSKAARQTKNQSGNSKDLTLHVEEEEDGGPRTRLRKRVLEKESEGKLKEKRTKREKEKNTTAAKVLVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01270 1536 ProSiteProfiles Zinc finger C2H2 type domain profile. 1504 1535 IPR013087 -
Vian1g01270 1536 Gene3D Classic Zinc Finger 1389 1443 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1360 1401 - -
Vian1g01270 1536 Gene3D Classic Zinc Finger 1444 1528 - -
Vian1g01270 1536 ProSiteProfiles Zinc finger C2H2 type domain profile. 1444 1473 IPR013087 -
Vian1g01270 1536 ProSitePatterns Zinc finger C2H2 type domain signature. 1446 1468 IPR013087 -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1018 1057 - -
Vian1g01270 1536 ProSiteProfiles JmjC domain profile. 166 335 IPR003347 -
Vian1g01270 1536 SUPERFAMILY Clavaminate synthase-like 94 338 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1037 1051 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1160 1188 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1230 1257 - -
Vian1g01270 1536 SUPERFAMILY beta-beta-alpha zinc fingers 1484 1528 IPR036236 -
Vian1g01270 1536 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1470 - -
Vian1g01270 1536 SMART c2h2final6 1504 1530 IPR013087 -
Vian1g01270 1536 SMART c2h2final6 1421 1443 IPR013087 -
Vian1g01270 1536 SMART c2h2final6 1444 1468 IPR013087 -
Vian1g01270 1536 SMART c2h2final6 1474 1498 IPR013087 -
Vian1g01270 1536 Pfam JmjC domain, hydroxylase 199 317 IPR003347 -
Vian1g01270 1536 ProSitePatterns Zinc finger C2H2 type domain signature. 1476 1498 IPR013087 -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1304 1322 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 666 688 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1299 1401 - -
Vian1g01270 1536 Gene3D Cupin 10 339 - -
Vian1g01270 1536 SMART cupin_9 166 335 IPR003347 -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1157 1188 - -
Vian1g01270 1536 FunFam Probable lysine-specific demethylase ELF6 10 339 - -
Vian1g01270 1536 ProSiteProfiles Zinc finger C2H2 type domain profile. 1474 1503 IPR013087 -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 934 966 - -
Vian1g01270 1536 SUPERFAMILY beta-beta-alpha zinc fingers 1444 1480 IPR036236 -
Vian1g01270 1536 FunFam Probable lysine-specific demethylase ELF6 1471 1500 - -
Vian1g01270 1536 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Vian1g01270 1536 SMART JmjN_1 16 57 IPR003349 -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 1333 1359 - -
Vian1g01270 1536 Pfam jmjN domain 18 51 IPR003349 -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 934 977 - -
Vian1g01270 1536 MobiDBLite consensus disorder prediction 666 686 - -
Vian1g01270 1536 ProSitePatterns Zinc finger C2H2 type domain signature. 1506 1530 IPR013087 -
Vian1g01270 1536 FunFam Probable lysine-specific demethylase ELF6 1501 1530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01270 Vian-Chr1 13731268 13738785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01270 1158 1534 C2H2 Transcription Factor Family AT3G48430 38.462 5.81e-68 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g01270 JmjC 1.7e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01270 - - gmx:100775813 1905.57