Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01268 ATGGATGGTAGGAGACATTCTGTTGATATTCCTATTTCTAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCATCAACTAATGGTGTCAGCAAACTCTCTCCTTTGATTCATGATGGAGATTGGGACAATGGTTCTAGTAATGGGGTTTCTCTAAGTTTGAGATTTCTCAACGGTTCTCATGCTGGTCATTGCGACGGTAATGACTTTTCAAGATCAAACAGTTTAGACTTTAAGGATCTGAGAGAGCAGGAAACTGCTGAGTTAGAATTGAAAATGTTGAACTATAAGATGAACTATTGTGGGATCTCTCGTCAGGAAGGGCAACGAGATGATGAACATGTGTACTCTAATCCTAAGCAGCAAGGTATTTCTGGAGATAAATCGCCAAATGAAAGCAGTTGTAGTAACCATGAAGGTGAAAGATTGGATTTGGTTGCCATTACGCCTCCATGTAATCATTTGAGGGATGGTGAGTTATGCTATTTATCAACTGCATTGAGAGTAGATCACTCAAAGTCAGCTAGAAAATCACTACGCAAGAATCAAATGAAACCATCTGGAGTGGTGGGTGATATAGCAAGCCATGTAGGAAGTCAACAGTGCCTTTCTGTTTATGATTCTATCTCAGCTCGTTGTGGCTTGGAACTTGTCACTCAAGATGTTGACGCTTTAGATAATCGCCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCCGAAATAGAAGGTCTTCCCTTGATATTGCAGCACGCTAATGAAACGGATCTCAATGGACGTAGAAACATTGGACACATTAGTGGTGAAATTAGTCCAAATATGGAAACTCCTAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTGTAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCACGCGGCACGGGCAAGACCTCAGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTATCCTCTGTGGAGCAAAAGCCTTGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTCTCTGGAAGAAATAAGAATGTTAGTGAAGTAGATTCTTTGAGAATCAATCGTGCAGAGAAAGTTAAATCCCTTGTTAAGCATGCATGCGTTCCTCCAGTTTCTTCAAGCTTTAAAGTGTTCATTGTTGATGAGTGCCAGTTATTGCATAGGGAAACATGGGCGTGCCTTTTGAATAGTCTAGAGAATGTTTCTCCTCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACGTTCCTCGGAGTGCAGCATCACGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGTTGACATTGTAAGAAGATTAGAAACAATATGTGTCGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGAGATGCAGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAGATCACAGTATCCTTAGTCCACGAGCTAGTGAGTGTTTTGCTTTGTTCTCTGCGTACTGGGATAATTTCTGATGATGAATTGCTTGATTTGTTGGACCTAGCTTTATCCTCTGACACTTCAAATACAGTTATACGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTGTCAGGGAAATGTGAACTTCGTGGCTCTGAAATAAAAACAGGATTTTATAATAGATATACATCGGAAGCAGACCTGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAATCAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTGCAGCTGAGCTCCGTTGAATATTCATCGGCTGATGCAAATACTACGAAGTTGTGTACACGACCTGCTTCCATTAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGTGACAGCTTGGAGCATCTTGCCACTACAGATCAATGTGATGATAAGTCATATAGGTTAGAAGTGCAGGAGGACCACAAAGGAACGTTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTCAGAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCGTGCAGTTGCGGAGCTGGAGTTCCAGCATCGAGACTATGTAAGTAGGGCTGAGAAGTCGTGGAAGTTGATTGCAAGTTCTCTGCAGTTCGTATTGGGCTGTAACCTTGAGCTCAGAATCAATTATGTTCCTTCATGTGCCTCAGATTCTATTTATGCTAAATTGAAGAGGTCATCCATCAATTTCTTCGGTTGTTCTCGCAGAATTCGTTGGAAATCTTTATCATCTAATGAACAAGGAAGTGAATCAGACTATGCTGAATACACCTCTCAAAAGCCCACGATGAATGTTCAAACGCTAACCTGTTCCTCTGATTATGAACCCCGGGTGCCACCAGTCGAGGCCGGCAATGGAATTGGAATGCAGGTTATAACAGCTTTGAGAAGTAGTGAAGGAAATTTGCTAAGCTCAGGGAAAATGCTTTTGAAAAGGCCAGATCAAGAGACTCCAAGAATTTCTTGTTCGAGAGTTGATTCTTGCACGGAAGAGGGATGCAATTATGAACACATAGCTTCATCAACCCCTGATTTAGATAATCAGTCCGACTGTTTTCCTAGAACCCGCTGGCTTCATAAAAAGTTTGGCTCTTCTTATGCACCACAGCAGAAGGATTTTGTTTTATCTATGCCCAAGTTCAATTGTTCTGAGATTTGCAGATATGATCTGGAACCCAGTGTCTTTTCTCACCGTTCTAACAACTGCACTCAAGCAGCTGCGGAGAAGTAG 2958 0.4124 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSKLSPLIHDGDWDNGSSNGVSLSLRFLNGSHAGHCDGNDFSRSNSLDFKDLREQETAELELKMLNYKMNYCGISRQEGQRDDEHVYSNPKQQGISGDKSPNESSCSNHEGERLDLVAITPPCNHLRDGELCYLSTALRVDHSKSARKSLRKNQMKPSGVVGDIASHVGSQQCLSVYDSISARCGLELVTQDVDALDNRHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHANETDLNGRRNIGHISGEISPNMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAICRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVEQKPCGLCRECVLFFSGRNKNVSEVDSLRINRAEKVKSLVKHACVPPVSSSFKVFIVDECQLLHRETWACLLNSLENVSPHVVFVMITPDLDNVPRSAASRAQRYHFAKIKDVDIVRRLETICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITVSLVHELVSVLLCSLRTGIISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELRGSEIKTGFYNRYTSEADLQKLSHALRILSESEKQLRISKNQTTWFTAALLQLSSVEYSSADANTTKLCTRPASIRDGDICSTSPKGDSLEHLATTDQCDDKSYRLEVQEDHKGTLDSIWYKATEMCQSSRLRTFLRKQGKLSSVCISQGRAVAELEFQHRDYVSRAEKSWKLIASSLQFVLGCNLELRINYVPSCASDSIYAKLKRSSINFFGCSRRIRWKSLSSNEQGSESDYAEYTSQKPTMNVQTLTCSSDYEPRVPPVEAGNGIGMQVITALRSSEGNLLSSGKMLLKRPDQETPRISCSRVDSCTEEGCNYEHIASSTPDLDNQSDCFPRTRWLHKKFGSSYAPQQKDFVLSMPKFNCSEICRYDLEPSVFSHRSNNCTQAAAEK 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01268 985 SMART AAA_5 324 472 IPR003593 GO:0016887
Vian1g01268 985 MobiDBLite consensus disorder prediction 111 141 - -
Vian1g01268 985 SUPERFAMILY post-AAA+ oligomerization domain-like 544 645 IPR008921 GO:0003677|GO:0006260
Vian1g01268 985 NCBIfam DNA polymerase III subunit gamma/tau 292 647 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vian1g01268 985 FunFam Protein STICHEL-like 1 isoform C 538 651 - -
Vian1g01268 985 Pfam DNA polymerase III, delta subunit 309 465 - -
Vian1g01268 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 514 IPR027417 -
Vian1g01268 985 Gene3D - 284 463 IPR027417 -
Vian1g01268 985 FunFam DNA polymerase III subunit gamma/tau 466 528 - -
Vian1g01268 985 Gene3D - 467 528 - -
Vian1g01268 985 MobiDBLite consensus disorder prediction 121 136 - -
Vian1g01268 985 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 295 722 - -
Vian1g01268 985 CDD HLD_clamp_pol_III_gamma_tau 465 526 IPR045085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01268 Vian-Chr1 13710404 13714706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01268 283 519 Core DNA Replication Machinery Family AT1G21690 26.122 3.03e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01268 - - gmx:100812040 1091.64