Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01267 ATGGCCACCACTTCCACCTCTCTCCTCTTCCTCCTCTTCTCTCTCCTCACCCCCTCTCTCATTTCTTCTTCACCGCTTCAAAACCCTGAATTGGTTGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTGTGGCCAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCAATAGACGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAGAGGCTGGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGGAAAATCTACGTGGTGACGGATTCAAGCGACGATAACGCGGTGACGCCTAAGCCGGGGACGCTCCGTTACGCGGTGATTCAGGAGGAGCCTCTTTGGATCATATTCGCGAGGGACATGGTGATTAAGCTGAAGGAGGAGCTTATAATGAACTCGTTCAAGACGATCGACGGAAGAGGAGCCAGCGTGCACATTGCGGGTGGGCCATGCATTACGATACAGTATGTGACGAATGTTATAATCCACGGGATAAATATTCACGACTGTAAGCAAGGGGGGAATGCTATGGTGCGGGACTCCCCAAGGCACTACGGGTGGAGGACCGTATCCGACGGTGATGGCGTGTCGATCTTTGGAGGAAGCCACATATGGGTTGACCACTGCTCCTTGTCTAACTGCAATGATGGGCTGATCGATGCCATTCATGGGTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCATGATAAAGTGATGCTTTTGGGCCACAGCGACGCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGGGAAGGGCTCGTTCAGAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCCGACCCAACCATCAACAGTCAAGGAAATAGGTTCGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAATGAATGGAAAGGGTGGAATTGGAGGTCAGAAGGAGACCTAATGGTAAACGGTGCGTTTTTCACAGCATCGGGAGCAGGAGCCTCCTCTAGCTATGCAAGAGCCTCTAGCCTGAGCGCGAGGCCATCTTCGCTGGTGGGCTCCATAACGACCAATGCGGGTGCACTCAACTGCAGGAAGGGTTCCCGCTGCTGA 1221 0.5152 MATTSTSLLFLLFSLLTPSLISSSPLQNPELVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDNAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFVAPDDRFSKEVTKHEDAPENEWKGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01267 406 Gene3D - 57 399 IPR012334 -
Vian1g01267 406 SUPERFAMILY Pectin lyase-like 39 401 IPR011050 -
Vian1g01267 406 FunFam Pectate lyase 57 399 - -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Vian1g01267 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Vian1g01267 406 SMART amb_all 132 329 IPR002022 -
Vian1g01267 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Vian1g01267 406 Pfam Pectate lyase 139 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01267 Vian-Chr1 13684191 13685849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01267 9 406 Polysaccharide Lyase AT5G63180 79.500 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01267 K01728 - gmx:100101868 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01267 1 13684191 13685849 Vian4g00928 4 13361433 13363568 ECH
Vian2g03139 2 51944880 51946621 Vian1g01267 1 13684191 13685849 ECH
Vian4g00928 4 13361433 13363568 Vian1g01267 1 13684191 13685849 ECH
Vian1g01267 1 13684191 13685849 Vian1g01267 1 13684191 13685849 ECH
Vian1g01267 1 13684191 13685849 Vian4g00928 4 13361433 13363568 PCT