Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian1g01258 | ATGTCTATGCCTTTCTCTCTCACAACCACGTCTTCCTTCAACTCTCTCACAATGGCGGAATCATGCATTCTCTCTCTCCCTTCTCTCTTCCGCGTCAATAACAAAACCCTTTCTCTCTCAGTTCCCTCCAAGCGCCTCAACCTCAAGCTTCCATGCTCCAATTCTTCCTTCTTTCCCCTCACCACCAACACCACCCGCCTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGGAGAGGAAGGCAACGCCATATGGGAGAACGAAGGCGAAACCGCGTGGGGAACTGAAGAAGGTGGCGATGACGGCGCGGAGGAAGTCACCGGAGGGGGTTTCGCTCAACCACCCGAGGAAGTTAAGATCTTTGTCGGGAACTTGCCTTATGATATTGGTAGCGAGCAATTGGCTTTCCTTTTTAAGGAGGCTGGCACCGTTGAGGTTGCTGAGGTAATTTATAATAGGGTCACTGACCGGAGTCGTGGCTTTGGATTTGTCACCATGAGTACACTTGAAGAGGTTGAGAAGGCTGTCAAGAAGTTCAGTGGTTACGAACTAAATGGAAGAGTGTTGACCGTAAATAAGGCTGCTCCAAAAGGAGCACAGCCTGACCGCTCATCACAGCCACCACGAACCTTGAGTTCTGGTACAAGAATCTACGTTGGGAACTTGCCATGGACTGTTGACAATGCTCGGCTAGAGCAAATTTTTAGTGAACATGGTAAGGTTGTGGAGGCTCGGGTGGTCTTTGACAGGGAGAGTGGTCGATCACGTGGATTTGGCTTTGTCACAATGGCCAGTGAGGCTGATGTGAATGATGCGATTGCTGCTCTTGATGGTCAGGAATTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAACTCCTACTGA | 918 | 0.5065 | MSMPFSLTTTSSFNSLTMAESCILSLPSLFRVNNKTLSLSVPSKRLNLKLPCSNSSFFPLTTNTTRLPSLLTFVAQTSDWAQGEEGNAIWENEGETAWGTEEGGDDGAEEVTGGGFAQPPEEVKIFVGNLPYDIGSEQLAFLFKEAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVKKFSGYELNGRVLTVNKAAPKGAQPDRSSQPPRTLSSGTRIYVGNLPWTVDNARLEQIFSEHGKVVEARVVFDRESGRSRGFGFVTMASEADVNDAIAALDGQELDGRPIRVNVAEERPRRNSY | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian1g01258 | 305 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 210 | 304 | - | - | |
Vian1g01258 | 305 | SUPERFAMILY | RNA-binding domain, RBD | 210 | 303 | IPR035979 | GO:0003676 | |
Vian1g01258 | 305 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 201 | IPR000504 | GO:0003723 | |
Vian1g01258 | 305 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Vian1g01258 | 305 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 125 | 194 | IPR000504 | GO:0003723 | |
Vian1g01258 | 305 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 222 | 292 | IPR000504 | GO:0003723 | |
Vian1g01258 | 305 | CDD | RRM2_NsCP33_like | 221 | 296 | - | - | |
Vian1g01258 | 305 | Gene3D | - | 207 | 304 | IPR012677 | - | |
Vian1g01258 | 305 | Gene3D | - | 81 | 206 | IPR012677 | - | |
Vian1g01258 | 305 | SMART | rrm1_1 | 124 | 197 | IPR000504 | GO:0003723 | |
Vian1g01258 | 305 | SMART | rrm1_1 | 221 | 294 | IPR000504 | GO:0003723 | |
Vian1g01258 | 305 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 220 | 298 | IPR000504 | GO:0003723 | |
Vian1g01258 | 305 | PANTHER | OS02G0815200 PROTEIN | 40 | 301 | - | - | |
Vian1g01258 | 305 | SUPERFAMILY | RNA-binding domain, RBD | 119 | 214 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian1g01258 | Vian-Chr1 | 13613770 | 13616133 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian1g01258 | 125 | 302 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 33.696 | 2.18e-22 | 95.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian1g01258 | - | - | gmx:100811487 | 414.461 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian1g01258 | 1 | 13613770 | 13616133 | Vian4g00919 | 4 | 13079855 | 13088975 | ECH | |
Vian1g01258 | 1 | 13613770 | 13616133 | Vian1g01258 | 1 | 13613770 | 13616133 | ECH | |
Vian1g01258 | 1 | 13613770 | 13616133 | Vian4g00919 | 4 | 13079855 | 13088975 | PCT |