Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01258 ATGTCTATGCCTTTCTCTCTCACAACCACGTCTTCCTTCAACTCTCTCACAATGGCGGAATCATGCATTCTCTCTCTCCCTTCTCTCTTCCGCGTCAATAACAAAACCCTTTCTCTCTCAGTTCCCTCCAAGCGCCTCAACCTCAAGCTTCCATGCTCCAATTCTTCCTTCTTTCCCCTCACCACCAACACCACCCGCCTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGGAGAGGAAGGCAACGCCATATGGGAGAACGAAGGCGAAACCGCGTGGGGAACTGAAGAAGGTGGCGATGACGGCGCGGAGGAAGTCACCGGAGGGGGTTTCGCTCAACCACCCGAGGAAGTTAAGATCTTTGTCGGGAACTTGCCTTATGATATTGGTAGCGAGCAATTGGCTTTCCTTTTTAAGGAGGCTGGCACCGTTGAGGTTGCTGAGGTAATTTATAATAGGGTCACTGACCGGAGTCGTGGCTTTGGATTTGTCACCATGAGTACACTTGAAGAGGTTGAGAAGGCTGTCAAGAAGTTCAGTGGTTACGAACTAAATGGAAGAGTGTTGACCGTAAATAAGGCTGCTCCAAAAGGAGCACAGCCTGACCGCTCATCACAGCCACCACGAACCTTGAGTTCTGGTACAAGAATCTACGTTGGGAACTTGCCATGGACTGTTGACAATGCTCGGCTAGAGCAAATTTTTAGTGAACATGGTAAGGTTGTGGAGGCTCGGGTGGTCTTTGACAGGGAGAGTGGTCGATCACGTGGATTTGGCTTTGTCACAATGGCCAGTGAGGCTGATGTGAATGATGCGATTGCTGCTCTTGATGGTCAGGAATTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAACTCCTACTGA 918 0.5065 MSMPFSLTTTSSFNSLTMAESCILSLPSLFRVNNKTLSLSVPSKRLNLKLPCSNSSFFPLTTNTTRLPSLLTFVAQTSDWAQGEEGNAIWENEGETAWGTEEGGDDGAEEVTGGGFAQPPEEVKIFVGNLPYDIGSEQLAFLFKEAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVKKFSGYELNGRVLTVNKAAPKGAQPDRSSQPPRTLSSGTRIYVGNLPWTVDNARLEQIFSEHGKVVEARVVFDRESGRSRGFGFVTMASEADVNDAIAALDGQELDGRPIRVNVAEERPRRNSY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01258 305 FunFam 31 kDa ribonucleoprotein, chloroplastic 210 304 - -
Vian1g01258 305 SUPERFAMILY RNA-binding domain, RBD 210 303 IPR035979 GO:0003676
Vian1g01258 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Vian1g01258 305 MobiDBLite consensus disorder prediction 198 217 - -
Vian1g01258 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Vian1g01258 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Vian1g01258 305 CDD RRM2_NsCP33_like 221 296 - -
Vian1g01258 305 Gene3D - 207 304 IPR012677 -
Vian1g01258 305 Gene3D - 81 206 IPR012677 -
Vian1g01258 305 SMART rrm1_1 124 197 IPR000504 GO:0003723
Vian1g01258 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Vian1g01258 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Vian1g01258 305 PANTHER OS02G0815200 PROTEIN 40 301 - -
Vian1g01258 305 SUPERFAMILY RNA-binding domain, RBD 119 214 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01258 Vian-Chr1 13613770 13616133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01258 125 302 Eukaryotic Initiation Factors Gene Family AT3G16380 33.696 2.18e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01258 - - gmx:100811487 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01258 1 13613770 13616133 Vian4g00919 4 13079855 13088975 ECH
Vian1g01258 1 13613770 13616133 Vian1g01258 1 13613770 13616133 ECH
Vian1g01258 1 13613770 13616133 Vian4g00919 4 13079855 13088975 PCT