Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01255 ATGGAGATGGAACGGGTTTTCGAATTTCCTCACACTCACATGGATCGACGCCCGAGAAAGAGAGCACGGTTGGGCTGGGACATTCCTGAGGCTTCTAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGAGACTATTTCCAGCTATGCTCCTTCAAGTGGTCCCTCAGAACATAGCACTAGTTCTCTATTTGTTAAGGCAGTTGCTCAAAATGGTTCTCCCTCTTGGCGAGACGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAGGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGAAAGTATTAGAATGTTGGGACAGAGAAAGGAAAGACATGGTTGCAATAAAAATTATTCGAGGGATAAAGAAGTATAGAGAAGCAGCCATGATAGAAATTCAGGTGTTGGAACAGCTTGGTAAACATGACAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGACTTGCGGATGATTCATACTGACCTCAAGCCGGAAAACATACTACTAGTGTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGCACAACCAGATCTCCTGGTTCCTATTTCAAAAGGGTTCCCAAATCAAGTGCTATAAAGCTTATTGATTTCGGCAGCACCACTTTTGAGAGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCGTGTGATATTTGGAGTGTGGGTTGTATATTGGTTGAGTTATGTACGGGAGAAGCTTTATTTCAGACTCATGAAAATTTAGAACATCTTGCAATGATGGAAAGGGTTCTTGGTCCATTACCACTGCACATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGGAGAGGTAGATTACATTGGCCTGATGGTGCGACTTCAAGGGATAGTATCAAAGCTGTAATGAAGCTTCCAAGGCTACAGAACCTTATAATGCACCATGTGGACCATTCAGCTGGCGATGTCATACATCTCTTGCAGGGGTTACTTAGGTTCGACCCTTCTGAAAGGCTTACAGCCAGAGAAGCTCTTAGACATTCCTTCTTTATGAGAGACCACTTTAGGAGATAA 1293 0.4238 MEMERVFEFPHTHMDRRPRKRARLGWDIPEASKAQVGLFCGQDVETISSYAPSSGPSEHSTSSLFVKAVAQNGSPSWRDDDKDGHYMFALGENLTSRYRIHSKMGEGTFGKVLECWDRERKDMVAIKIIRGIKKYREAAMIEIQVLEQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSTTRSPGSYFKRVPKSSAIKLIDFGSTTFEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPLHMLKRVDRHAEKYVRRGRLHWPDGATSRDSIKAVMKLPRLQNLIMHHVDHSAGDVIHLLQGLLRFDPSERLTAREALRHSFFMRDHFRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01255 430 FunFam Serine/threonine-protein kinase AFC2 174 423 - -
Vian1g01255 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01255 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01255 430 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
Vian1g01255 430 CDD PKc_CLK 85 423 - -
Vian1g01255 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Vian1g01255 430 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Vian1g01255 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 426 - -
Vian1g01255 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01255 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Vian1g01255 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01255 Vian-Chr1 13568038 13571567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01255 103 423 Core Cell Cycle Gene Families AT1G76540 25.904 4.40e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vian1g01255 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01255 K08287 - gmx:100804452 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01255 1 13568038 13571567 Vian1g01255 1 13568038 13571567 ECH