Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01245 ATGGCAATTTCTTCGGCGGCGGCAGGAGCAACCTCAAAGCTCTCATACCCTCATATCTACCCCTCTCCTTCACCCTCATCCAATTCCCTATTCCTCAAATCCCACACACCCTCCACCACCCACCTGTCCTCCTCCTTCATCCACCCCTCCACTGCCCTCCATCTCTCTCCCATCCCCTCCGCCCTTCGCCGCCGCTCCTTCACTGTCCGCGCTGCCCGCGGCAAGTTCGAGCGGAAGAAGCCCCACGTCAACATCGGCACCATCGGTCATGTCGACCACGGCAAGACCACCCTTACCGCTGCCCTCACCATGGCCCTCGCTTCCCTCGGTAACAGCGCCCCCAAGAAATACGATGAAATCGATGCTGCCCCCGAGGAGCGCGCCCGAGGCATCACCATCAACACTGCCACCGTCGAGTACGAGACCGAGAACCGTCACTATGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGAGCCATCCTCGTCGTATCCGGCGCCGACGGCCCAATGCCGCAGACCAAAGAACACATACTTTTGGCCAAACAAGTCGGTGTACCCAACATTGTGGTCTTTCTCAACAAGCAGGACCAGGTCGATGACGAAGAGCTTCTGCAGTTGGTAGAATTGGAGGTTCGTGAGCTTCTTTCTTCGTACGAATTCCCTGGTGATGATGTTCCCATTGTTTCTGGTTCTGCGTTGTTGGCTTTGGAAGCTTTGATGGCAAACCCTTCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAGATTTACGAGCTCATGGAAGCTGTGGATAACTACATTCCCATCCCTCAACGCCAAACTGAACTTCCCTTTTTGTTGGCCATTGAGGATGTGTTTACAATCACTGGACGTGGAACCGTGGCAACTGGCCGTGTTGAGCGGGGTACCATTAAGGTTGGAGAAACGGTTGATATTGTTGGTGTGAAGGAAACTAGGAACACCACTGTGACCGGGGTGGAAATGTTTCAGAAGATTCTGGACGAGGCTTTGGCTGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACTGATATTCAGAGAGGGATGGTTCTGTCTAAGCCTGGAAGCATTACCCCTCACACCAAGTTTTCTGCAATTGTTTATGTCTTGAAGAAGGAAGAGGGTGGCAGACATTCTCCCTTCTTCGCCGGGTACAGGCCTCAGTTCTACATGAGGACCACCGATGTTACTGGCAAAGTAACTTCCATTATGAATGACAAGGATGAGGAGTCCAAGATGGTGATGCCCGGTGACCGTGTTAAGATGGTGGTTGAACTTATTGTCCCCGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCTATCATTGAGTAA 1440 0.5306 MAISSAAAGATSKLSYPHIYPSPSPSSNSLFLKSHTPSTTHLSSSFIHPSTALHLSPIPSALRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPSIKRGENQWVDKIYELMEAVDNYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIKVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLSKPGSITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01245 479 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Vian1g01245 479 Pfam Elongation factor Tu domain 2 305 373 IPR004161 GO:0005525
Vian1g01245 479 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 378 478 IPR009001 -
Vian1g01245 479 Hamap Elongation factor Tu [tuf]. 71 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vian1g01245 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 306 IPR027417 -
Vian1g01245 479 PRINTS GTP-binding elongation factor signature 164 175 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 PRINTS GTP-binding elongation factor signature 148 158 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 CDD EF_Tu 81 283 IPR041709 -
Vian1g01245 479 Gene3D Translation factors 286 414 - -
Vian1g01245 479 Pfam Elongation factor Tu GTP binding domain 80 281 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 NCBIfam small GTP-binding protein domain 83 215 IPR005225 GO:0005525
Vian1g01245 479 PANTHER ELONGATION FACTOR TU-RELATED 68 478 - -
Vian1g01245 479 Pfam Elongation factor Tu C-terminal domain 378 477 IPR004160 -
Vian1g01245 479 CDD EFTU_II 291 377 IPR033720 -
Vian1g01245 479 CDD EFTU_III 380 474 - -
Vian1g01245 479 NCBIfam elongation factor Tu 72 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vian1g01245 479 SUPERFAMILY Translation proteins 285 381 IPR009000 -
Vian1g01245 479 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 284 IPR000795 GO:0003924|GO:0005525
Vian1g01245 479 Gene3D - 72 283 IPR027417 -
Vian1g01245 479 Gene3D Translation factors 418 478 - -
Vian1g01245 479 FunFam Elongation factor Tu 418 478 - -
Vian1g01245 479 FunFam Elongation factor Tu 286 414 - -
Vian1g01245 479 FunFam Elongation factor Tu 71 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01245 Vian-Chr1 13465087 13466526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01245 78 477 Eukaryotic Initiation Factors Gene Family AT5G60390 30.562 9.23e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01245 K02358 - gmx:100791320 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01245 1 13465087 13466526 Vian1g01245 1 13465087 13466526 ECH
Vian1g01245 1 13465087 13466526 Vian4g00907 4 12862558 12864009 PCT