Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01234 ATGAACCCCTACGACAATAGATACTCTGATCCCGCTTCTTTTCACGCTCGTCGCAGATCTATTCCGCCGCCGTCTCTAGGCGGTCGTGGCGACGTGGTTCCTTATGGCGTCTTTAGGTCCAATGGGTTAGGATCCGCACCCGTTGCTCCGGTTCCACCATTTGTACCCCCTCCTGGGGGTTTTAGCGTAGGACGAGGTAGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAATACGACATAGGTCGTAGTGGCGGTGGAAGAGGTGGTGGCGGCGGTGGAGGCGGGGTTCACGGTTTTCGGGGCTCCAGGAGAGGAGGTAGACACGATAGTGGATCTTCTAGGGACGATTTGAACAATATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGTTGAGAGCCATGTCTGAGCAAGAAGTTATGCATTACCGTGCTTCTAGAGAGATCACCGTGCATGGGCATGATGTGCCGAAACCTGTACGGATGTTCCATGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGAGATTTAATTGGCATAGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGATTGGCACATGGTGACGGTCCCATTGTCTTAGTATTAGCACCAACGAGAGAGCTGGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAATATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGCGAGCTTAGAAGAGGCGTTGAGATTGTTATTGCGACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGACCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCACAATCCGTACAAGGTTGATGCAATAGTAATTATCGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATCATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGGATTCTAATTTTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATTTCATAGAATGGGTTAATGCATGGTGGTTTACATGCTTGACTGAAGACGTGAAGGACATTAAATGTGTGATCAATTATGACTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCCAAAGGAACTGCTTACACATTTTTTACACACGGCAATGCCAAGTTTGCTAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGATGTGAGTCCTGCATTGTCTGCAATGGTTCGGTCAGCTGGTTCTGGTCAATATGGATCAGGGGGAAGTTTTCGCGCAAGAGGACGTGGAGGCTATGGGAATCGAGGTTTGACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTATCTATAG 1860 0.4704 MNPYDNRYSDPASFHARRRSIPPPSLGGRGDVVPYGVFRSNGLGSAPVAPVPPFVPPPGGFSVGRGSGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDSGSSRDDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVHGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLWSATWPREVETLARQFLHNPYKVDAIVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDFIEWVNAWWFTCLTEDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHGNAKFARDLIKILQDAGQDVSPALSAMVRSAGSGQYGSGGSFRARGRGGYGNRGLTSGSNAIPLGSKRPWQYL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01234 619 Gene3D - 388 577 IPR027417 -
Vian1g01234 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 381 IPR014001 -
Vian1g01234 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 152 574 - -
Vian1g01234 619 SMART ultradead3 194 401 IPR014001 -
Vian1g01234 619 Pfam DEAD/DEAH box helicase 199 370 IPR011545 GO:0003676|GO:0005524
Vian1g01234 619 CDD DEADc_DDX5_DDX17 187 381 - -
Vian1g01234 619 Pfam Helicase conserved C-terminal domain 505 535 IPR001650 -
Vian1g01234 619 Pfam Helicase conserved C-terminal domain 409 491 IPR001650 -
Vian1g01234 619 MobiDBLite consensus disorder prediction 60 122 - -
Vian1g01234 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 175 203 IPR014014 GO:0003724
Vian1g01234 619 Gene3D - 148 384 IPR027417 -
Vian1g01234 619 SMART helicmild6 438 535 IPR001650 -
Vian1g01234 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 381 IPR027417 -
Vian1g01234 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 574 IPR001650 -
Vian1g01234 619 FunFam probable ATP-dependent RNA helicase DDX17 137 384 - -
Vian1g01234 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 570 IPR027417 -
Vian1g01234 619 CDD SF2_C_DEAD 398 544 - -
Vian1g01234 619 MobiDBLite consensus disorder prediction 1 30 - -
Vian1g01234 619 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 327 335 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01234 Vian-Chr1 13337251 13343349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01234 172 555 Eukaryotic Initiation Factors Gene Family AT3G19760 33.506 4.07e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01234 K12823 - gmx:100817092 934.48