Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01215 ATGTCCACCTTCACGAACCACCACGTCGGCTCCACCACCTCCATGAACCACCAACTACGGCTTCCTCACCTATGGCATCCTTCATCAGTTCCTCACGCCGATAATGGCATCATGTCTTCAATAGATGTCTCGCAATACAAAGAAGGCGGTCAAGCACAGAATTTCCTTTCGTATATGCTCATGAACACTGATGACATGTCATACGAGACACTTTATAATGTGCAAGAATTTCCTTCATTAGGTGACCCTCATAGTGATATGCGCTTGGACATTGATGGCATGTCATATGAGGCAAGTATACTATATATTGAATGGATGAATGACAACTCGGAAAAGGGTTTGTCAGAAGATATTATTGCAAGACATATGCAGACAAAAAGTTATCTACTATCTGAGAACTTGGGGGATCAGGAATCTGATATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGGAGAGTGTATAAAGAGATGGTTACATGAGAAAAATGTTTGTCCCATGTGCAAATCAAAAGGATTGACTATTGAATAG 573 0.3997 MSTFTNHHVGSTTSMNHQLRLPHLWHPSSVPHADNGIMSSIDVSQYKEGGQAQNFLSYMLMNTDDMSYETLYNVQEFPSLGDPHSDMRLDIDGMSYEASILYIEWMNDNSEKGLSEDIIARHMQTKSYLLSENLGDQESDICIICQDEYKNKEEIGILQCGHEYHGECIKRWLHEKNVCPMCKSKGLTIE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01215 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Vian1g01215 190 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 10 187 IPR045191 GO:0061630
Vian1g01215 190 SUPERFAMILY RING/U-box 132 185 - -
Vian1g01215 190 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Vian1g01215 190 Pfam Ring finger domain 141 183 IPR001841 -
Vian1g01215 190 CDD RING-H2_RNF24-like 140 184 - -
Vian1g01215 190 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01215 Vian-Chr1 13044089 13049742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01215 82 187 C3H Transcription Factor Family AT2G15530 44.545 4.17e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01215 K19041 - var:108339113 253.832