Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01211 ATGGTGCAATTTTTTAACGTTCCTGAAAACCTTATTTCCTGTCTATGCCTAATGTTGCTGTCGTCGTCGTTGTTAATCCCACGTGCGGGCTGCTCCGGCACGGGTATACGCGAAACGGGTCTCACGTGCGGGGATTATGAGAACCCCGAGTCTTCCGCGTCCAACTTCATGGCCATAATGGACATGGTGTCGTTTCAGGTTAAAGAGCGAGGGTGGGGAGCGCAGACGCTGCTGGGTTCTGGGCCTCCGATGTACGCATTGGCCCAATGCCGGCGCGACCTGAGGCCAGCAGACTGCTACATGTGTTTCAGCCAAGCGAGGCTGGTGTTGTCACGGTGCGTGCCCAAGGCAGCTGGCAGAATCTACCTCGACGGCTGCTTCCTCCGATACGATGACTACTCCTTTATCCGTGAGAGCGTGGACCCCACTCATGACATCGGCATCTGCGTGAGCCCAACTGTGGGGAATGACACGGCCAGACGGGTGACGGCGACGGTGTCGAACGTGACGGAGGAGGCAGCGGAACGTGGGTTCGCGGTGGACGGAGGGGATGGGGTTTTCGCCCTGGCGCAGTGCTGGTCGACGCTGAACAAAGGGAGGTGCAAGATATGCTTGACCGAAGCGGCGAAGAAAGTGCAGGAATGTGTGCCGAGTGGTGAGGGTAAGAGTTTATTCACTGGTTGCATTTTGAGGTATTCAAGGCACAAATTCTACAACGACGTTTCACCACCTAACATCAAGGATTCTACTTCTACTTCTACAGTAAGCGACAGTGGTGGTTTGGCACCAGATTTTGCCTTCGTAGCAGGCTTCAGTTTTATGTATGATTTGCTCGAGAACGCCACAGATAATTTTGATCCCGCAAACAAATTAGGCCAAGGTGGAGCTGCTTCCGTGTTCAAAGGAACCCTCCCCACTGGGAAGACTGTTGCTGTTAAACGATTATCTTTTAATAAACGGCAATGGACAGAGGGGTTCTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAGAATGTGGTGAAGCTTTTGGGGTGCAGCATCGAAGGCCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAAGTCCTTTTCGGTAAGGGCTCAGAAGATGCTCTGAACTGGGAAAAACGTAGCATGCTCATTTTATCTCTTGTTCAGGTGTGGAAGAATTACAAGGCAAATAATATAACAGCATCCGTTGATCCAGTTCTGCAAGGTAAACTTACGGTAGACGAAGCATCAAATACGCTCCAAGCTGGCCTTCTTTGTACACAATCAACTGTTACTCTCAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGACTACGCTATTCCCTCTCCAAAGCAACAACCATTCTTCAATTTCAGTGGGCTAAGTCAAAATGACCGCACTGTATCCTCAATTGGGCTTGCAAGTGCAAGGTCCTCCTTTCACAGCACCACCAGTTCACTAATTCCAAATGATGATTTAACAGTACAAGGGAATTCCTTTCCTCATTCTGACAAGTTCATTGCTGGCAGCCCTGATTCAAATTTCCAATTAAATATGGGAGCGCCTGAGCCCAGGTAG 1602 0.495 MVQFFNVPENLISCLCLMLLSSSLLIPRAGCSGTGIRETGLTCGDYENPESSASNFMAIMDMVSFQVKERGWGAQTLLGSGPPMYALAQCRRDLRPADCYMCFSQARLVLSRCVPKAAGRIYLDGCFLRYDDYSFIRESVDPTHDIGICVSPTVGNDTARRVTATVSNVTEEAAERGFAVDGGDGVFALAQCWSTLNKGRCKICLTEAAKKVQECVPSGEGKSLFTGCILRYSRHKFYNDVSPPNIKDSTSTSTVSDSGGLAPDFAFVAGFSFMYDLLENATDNFDPANKLGQGGAASVFKGTLPTGKTVAVKRLSFNKRQWTEGFFNEVNLISGIQHKNVVKLLGCSIEGPESLLVYEFVPNGSLDQVLFGKGSEDALNWEKRSMLILSLVQVWKNYKANNITASVDPVLQGKLTVDEASNTLQAGLLCTQSTVTLRPSMSEVVQMLTKKDYAIPSPKQQPFFNFSGLSQNDRTVSSIGLASARSSFHSTTSSLIPNDDLTVQGNSFPHSDKFIAGSPDSNFQLNMGAPEPR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01211 533 ProSiteProfiles Protein kinase domain profile. 285 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01211 533 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 391 473 - -
Vian1g01211 533 Gene3D Transferase(Phosphotransferase) domain 1 375 464 - -
Vian1g01211 533 FunFam Cysteine-rich receptor-like protein kinase 2 262 360 - -
Vian1g01211 533 ProSiteProfiles Gnk2-homologous domain profile. 34 135 IPR002902 -
Vian1g01211 533 ProSiteProfiles Gnk2-homologous domain profile. 140 237 IPR002902 -
Vian1g01211 533 Pfam Salt stress response/antifungal 75 133 IPR002902 -
Vian1g01211 533 Pfam Salt stress response/antifungal 165 234 IPR002902 -
Vian1g01211 533 Gene3D Phosphorylase Kinase; domain 1 264 360 - -
Vian1g01211 533 Gene3D - 38 135 IPR038408 -
Vian1g01211 533 Gene3D - 152 237 IPR038408 -
Vian1g01211 533 Pfam Protein tyrosine and serine/threonine kinase 289 373 IPR001245 GO:0004672|GO:0006468
Vian1g01211 533 SUPERFAMILY Protein kinase-like (PK-like) 269 392 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01211 Vian-Chr1 13014102 13019441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01211 17 389 Receptor kinase-like Gene Family AT5G40380 43.341 2.67e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian1g01211 PK_Tyr_Ser-Thr 2.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01211 - - var:108339307 610.527