Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01204 ATGGACATTCAAGGTAACCTCACAGAAAACCAGGCCTCGCAGCCAATGCATGTGCAAGAAAACTGCCTGAAACCCAGCATGGAGGATCAGCTTCCTTTTGGAGTTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCATCATATTGATCACTTTCCTGTGAATGATGGCTCCTCATCCAATCCTATTTTCTTGCAACATACTCCAAATTTTGATCCCTTTGATCACAATGTAAACTGTGAGTCTGCACCTCCTGATTTTGAAGTTTTTGAGTGCAAGCCTTTTGCTGAGAGCAATGGTAGTGCACATGTTCATCTGATGCACAATTTCCAATATGTAGGTTATAGTTTGAACCTCCCTCGGACGAATCAACTGGATATGGTGGTGGCAAACCAGAGATTCCTGCCCTTCGGTGCTCTAGAAACGAAACCTTTGAATTTTGTTGCACCAGATGAAATCTCATGCATATCCCCACCTAAATTTTATAAGAAAGTTGGTTTGAATAAAAACCTTAGGGAATCCTCTAGCACTAGGAGAACATTCAAAGCTCGGAAGAAATCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAGTGGTCACACATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATGTGGACTGAAGAAGAGGATAAAATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAAGTTGCCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAGAGAAAATGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACCTAGACCAAAATCCACCTATGGACTATCGAAAAAAATCTGTTAAAAATGCCAATCCAAAGACAAACAATAACGGCAAAGCAGCAGCTGAGCTCCTGTGTGGTGATCAATTCTGTTCCAATGGGCAGTTGGTGACAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGTAGCATTGATTCTCTGCTAGATGATATACAAAGTGCTTCTACTATGGATGACAAAGATTTTGATGGAAAAGTACAATGTGCTCCTACTGTGGAGGGAAAACAGTCTCATCATCATCACACTGAGATAACTATGGGGATTGAAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCACATCACGTTAATGAAAAGTAG 1338 0.4133 MDIQGNLTENQASQPMHVQENCLKPSMEDQLPFGVPSSQGFLQDFHHIDHFPVNDGSSSNPIFLQHTPNFDPFDHNVNCESAPPDFEVFECKPFAESNGSAHVHLMHNFQYVGYSLNLPRTNQLDMVVANQRFLPFGALETKPLNFVAPDEISCISPPKFYKKVGLNKNLRESSSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVDQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDMWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPMDYRKKSVKNANPKTNNNGKAAAELLCGDQFCSNGQLVTKYDFNEVPDFCLDDNLFEEGCSIDSLLDDIQSASTMDDKDFDGKVQCAPTVEGKQSHHHHTEITMGIEVKKELDLVEMMSHHVNEK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01204 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 291 IPR017930 -
Vian1g01204 445 Pfam Myb-like DNA-binding domain 244 284 IPR001005 -
Vian1g01204 445 Pfam Myb-like DNA-binding domain 190 236 IPR001005 -
Vian1g01204 445 Gene3D - 189 241 - -
Vian1g01204 445 CDD SANT 245 287 IPR001005 -
Vian1g01204 445 Gene3D - 243 295 - -
Vian1g01204 445 ProSiteProfiles Myb-like domain profile. 237 287 IPR001005 -
Vian1g01204 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Vian1g01204 445 PANTHER MYB PROTEIN-RELATED 171 329 - -
Vian1g01204 445 FunFam Transcriptional activator Myb isoform A 189 242 - -
Vian1g01204 445 CDD SANT 193 236 IPR001005 -
Vian1g01204 445 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
Vian1g01204 445 SUPERFAMILY Homeodomain-like 187 283 IPR009057 -
Vian1g01204 445 SMART sant 189 238 IPR001005 -
Vian1g01204 445 SMART sant 241 289 IPR001005 -
Vian1g01204 445 FunFam Transcription factor MYB119 243 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01204 Vian-Chr1 12954699 12956346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01204 116 389 MYB Transcription Factor Family AT4G18770 54.828 1.27e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g01204 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01204 K09422 - gmx:100816653 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01204 1 12954699 12956346 Vian1g01204 1 12954699 12956346 ECH