Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01202 ATGGAAGAAACATTTGTTCCGTTACGTGGGATAAAGAATGACCTCAAAGGAAGACTTGTGTGCTACAAACAAGATTGGACTAGTGGATTCCAAACAGGCATCAGGATCCTTGCCCCAACTACATATATATTTTTCGCTTCAGCAATTCCAGTGATCTCTTTCGGGGAGCAACTGGAAAGAAACACAGATGGAACTCTAACTGCAGTGCAGACCCTTGCATCAACAGCACTCTGTGGCATTATCCATTCAATCTTAGGAGGGCAGCCCCTCCTCATACTTGGTGTAGCGGAGCCAACAGTTCTTATGTATACATTTTTGTATGACTTTGCAAAGGATAGAAAAGATTTGGGACACAAACTATTCCTTCCTTGGACTGGATGGGTGTGTGTTTGGACTGCTGCGTTGCTCTTCTTGCTGGCCATTGTTGGTGCATGCTCCATAATCAACAGATTCACGCGCCTTGCAGGTGAACTATTTGGTCTGCTGATTGCAATGCTCTTCATGCAGCAGGCGATAAGGGGACTCGTGGAAGAGTTCGGTGTGCCCCAGTCCCAGGGAGAAGGTACCAATCAGATTGCACTCCAATCTTCTTGGCTGTTTGGAAATGGAATGTTTGCTTTGGTTTTGTCATTTGGCCTTCTGTTTACTGCACTAAAAAGCCGTAAGGCTAGATCCTGGCGATACGGAGCAGGTTGGTTGCGGGGATTTGTGGCTGATTATGGAGTCCCACTAATGATTCTGGTGTGGACTGCTGTGTCTTATATGCCAACCAATAAGGTTCCAAGGGGAATCCCTAGGCGACTTTTCAGTCCAAATCCATGGTCTCCCGGTGCATACACAAATTGGACAGTAATTAAGGAAATGTTGAATGTGCCTCTCATCTATATTATTGGAGCATTTATACCCGCGACTATGATTGCCGTGCTTTATTACTTTGATCACAGTGTTGCTTCACAACTTGCCCAGCAAAAGGAGTTCAATCTAAGAAAACCCTCATCATATCATTATGACCTTCTCCTCTTGGGTTTCTTGACCATTTTGTGTGGGCTTATTGGAATCCCTCCGGCCAACGGTGTGATTCCTCAATCTCCTATGCATACTAAAAGCTTAGCTACTCTAAAACATCAGCTGTTGCGTAAAAAAATTGTATCTGCCGCACGGAAAAGCATACAGAAAAATATGAACCTGAATCAGCTATACCAAAGTATGCAAGAAGCATATGATCAAATGCAGACTCCGTTAGCCCACCAAATACCACCTGCCTTGGGGCTAAAGGAGATGAAGGAATCCACCATCCAACTGGCTCAAAGTCATGGATACACTGACACCCCTGTTGATGAGGTTGTATTCGATGTGGATAAGGATGTTGATGACCTTTTACCTGTTGAAGTAAAAGAACAGCGCCTCAGCAATCTACTGCAGGCATTAATGGTTGCACTTTGTGTTGCTGCTATGCCTCTTTTGAAGAAAATACCAACTTCAGTGCTTTGGGGTTACTTTGCTTTCATGGCAATTGAAAGCTTGCCCGGAAATCAGTTTTGGGAGAGAATATTATATCTTTTCACTGCTCCAAGTCGACGATACAAAGTGCTGGAGGAACACCATGCGGCCTTTATTGAGACCGTGCCTTTCAAAGCGGTGGCCATGTTTACATTATTCCAGACAGCTTACTTGCTTCTCTGCTTTGGTCTAACATGGATACCAATTGCCGGGGTCCTTTTCCCAATGTTAATCATGCTTCTTATCCCAGTACGTCAATATTTCCTTCCCAAGTTTTTTAAAGGAGCCCATCTTCAAGAATTGGATGCTGCAGCATATGAGGAAGCATCTGTTGTCAGTTTCAACTTGTCATTCGAAGATTCAGATAGTCAGACAGCAACAGTCAATATTAATAGTGAGGAAATTCTTGATGAAATTATCACAAGGAGTCGTGGGGAGATCGTAAATCAGAAATCGAAGAATTCAACTCCAACATCATGTGGACATACTATTCCTGCTTATGCAAATAGCTCATAG 2016 0.436 MEETFVPLRGIKNDLKGRLVCYKQDWTSGFQTGIRILAPTTYIFFASAIPVISFGEQLERNTDGTLTAVQTLASTALCGIIHSILGGQPLLILGVAEPTVLMYTFLYDFAKDRKDLGHKLFLPWTGWVCVWTAALLFLLAIVGACSIINRFTRLAGELFGLLIAMLFMQQAIRGLVEEFGVPQSQGEGTNQIALQSSWLFGNGMFALVLSFGLLFTALKSRKARSWRYGAGWLRGFVADYGVPLMILVWTAVSYMPTNKVPRGIPRRLFSPNPWSPGAYTNWTVIKEMLNVPLIYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRKKIVSAARKSIQKNMNLNQLYQSMQEAYDQMQTPLAHQIPPALGLKEMKESTIQLAQSHGYTDTPVDEVVFDVDKDVDDLLPVEVKEQRLSNLLQALMVALCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKVLEEHHAAFIETVPFKAVAMFTLFQTAYLLLCFGLTWIPIAGVLFPMLIMLLIPVRQYFLPKFFKGAHLQELDAAAYEEASVVSFNLSFEDSDSQTATVNINSEEILDEIITRSRGEIVNQKSKNSTPTSCGHTIPAYANSS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01202 671 Gene3D Helical hairpin bin 18 60 - -
Vian1g01202 671 FunFam probable boron transporter 2 18 60 - -
Vian1g01202 671 Pfam HCO3- transporter family 462 552 IPR011531 GO:0006820|GO:0016020
Vian1g01202 671 Pfam HCO3- transporter family 204 375 IPR011531 GO:0006820|GO:0016020
Vian1g01202 671 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016020
Vian1g01202 671 PANTHER ANION EXCHANGE PROTEIN 2 610 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vian1g01202 671 MobiDBLite consensus disorder prediction 649 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01202 Vian-Chr1 12934919 12939377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01202 1 667 Antiporters AT3G62270 74.213 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01202 K24194 - gmx:100815420 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01202 1 12934919 12939377 Vian1g01202 1 12934919 12939377 ECH
Vian1g01202 1 12934919 12939377 Vian4g00856 4 11740319 11744756 PCT