Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01194 ATGTTTTCTGTTAAGCATTGGGTTGGGGAAAAATGGGTTTATGTTTGGGTTGAACTTCTGGAGATGAAGGAGAGGGTGTTCAGAATTCTCAGGGTAAAAGATAGATATGATAACAATGAGGGAAGAACTGCATTGATTGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGTGATAGTATTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCCACATCCGGGAATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAACAGGTTGCAGCTGGGTGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAGGGGATGGCTGCCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGAGATCTTGAACAAAAGAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGCAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTCACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGACTTGCATCACATCCTGGACTGAAGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTTCACCGTGACATTAAGGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCGCCTAGCAAAGAATTTGATGCCAAGGTGCGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCTTGAGAGAAAAGGCACAAGAGAATCACGAGCAATTCCTGCACCTGATGCCAATGCTGAACTGGTCCTGTCAATGCAGGTTTGGTCATTTTTAGTTGTTAAACTAACCCCTCTTGGTCCACTGACACACCGTGCCGCATGGGCCAAAGCCGGGAAGAACCAAGAGGATGCTCCAAAGGTTTCAATGGGGGGTGACTTATCAACAATATCAGGCTTAGTCGCGGCAAGGAGGAGTATGCTCTCTGACGATCGCAGAGAAAGGTCTGCATCATCACAAGCAGATGCCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGACGCAACAGGATCAGAAGAATAATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTTGGATATGGCTCAAAGGGTCATAAAATTCATTATTCTGGGCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGATCATGACCGGCAAATCCAAGAGGCGGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGGAACCAGATAAGCAATTCATTATTTGGAGTTAGTATCCCTCAATGCCCCTCTGTGACCATGTTAGGTAACTCTAGCTCAGAACTCTTCACCATGTATTTTCCTTCTTCCACTTACAATCATTATATGGCCATTCTTGCAAAGCTTATCAGCATAAGCTGTAGTAGAGTATTGGGAAACCTTGTCTTCCTTATGTTTAACTTATGA 1644 0.4483 MFSVKHWVGEKWVYVWVELLEMKERVFRILRVKDRYDNNEGRTALIDKQGNGSVRVQGDSIERKREKMEYAVAPHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKLNVTCSNFYVDLITATAVVYFTVTLRFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDLERKGTRESRAIPAPDANAELVLSMQVWSFLVVKLTPLGPLTHRAAWAKAGKNQEDAPKVSMGGDLSTISGLVAARRSMLSDDRRERSASSQADAQKLISRFPGSFKEASESMTQQDQKNNHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQISNSLFGVSIPQCPSVTMLGNSSSELFTMYFPSSTYNHYMAILAKLISISCSRVLGNLVFLMFNL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01194 547 FunFam probable serine/threonine-protein kinase At1g54610 104 199 - -
Vian1g01194 547 MobiDBLite consensus disorder prediction 259 294 - -
Vian1g01194 547 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Vian1g01194 547 MobiDBLite consensus disorder prediction 251 294 - -
Vian1g01194 547 SUPERFAMILY Protein kinase-like (PK-like) 111 220 IPR011009 -
Vian1g01194 547 MobiDBLite consensus disorder prediction 391 405 - -
Vian1g01194 547 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vian1g01194 547 Pfam Protein kinase domain 117 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01194 547 SMART serkin_6 117 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01194 547 MobiDBLite consensus disorder prediction 391 429 - -
Vian1g01194 547 ProSiteProfiles Protein kinase domain profile. 117 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01194 547 PANTHER CELL DIVISION PROTEIN KINASE 115 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01194 Vian-Chr1 12854698 12859331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01194 109 237 Core Cell Cycle Gene Families AT5G10270 42.069 6.72e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian1g01194 Pkinase 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01194 - - gmx:100792173 358.221