Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01192 ATGCGGTGCAGGCGCACCCGGACTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGTCCGTTTGTTTTTATTTTTTGTTTGTTCCTGCACTTAGTTATTACTACTGGGCCTGGGCCCTGCCCTGTTCACTGGGTTTTGTTTATGGGCTTTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTACTCAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGAATTTGCTTCCAACTTCTCTAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAATCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTGTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTGGTGTCGTTGAAAGTCTCAAAACTTCCGACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGCTGGGCGCCGCTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCGCAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGGTCACAACGAATTATATCGTTTACAAGAAAACGGGCTTAATGCATGAAAAGCTTGACGTGGAGCATTGTGGAGACTTTGGAGGTGGAGGCGAATACGTGCCCCAGACTGGTTTTGGCTGGTCAAATGGTGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 1380 0.4457 MRCRRTRTCIRCSLSPVPLSFPVRVFARFITGILTGLLGPFVFIFCLFLHLVITTGPGPCPVHWVLFMGFRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYTNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQEFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFVLGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVAGVVESLKTSDLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIAIRWVTTNYIVYKKTGLMHEKLDVEHCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01192 459 Pfam Trehalase 64 450 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PANTHER TREHALASE 67 457 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 ProSitePatterns Trehalase signature 2. 360 369 IPR018232 GO:0004555|GO:0005991
Vian1g01192 459 SUPERFAMILY Six-hairpin glycosidases 71 452 IPR008928 GO:0005975
Vian1g01192 459 Gene3D - 62 457 IPR012341 GO:0005975
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 233 250 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 166 183 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 433 446 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 96 114 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 276 292 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 353 369 IPR001661 GO:0004555|GO:0005991
Vian1g01192 459 PRINTS Glycosyl hydrolase family 37 signature 201 218 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01192 Vian-Chr1 12811289 12814681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01192 63 459 Trehalose Biosynthesis Gene Families AT4G24040 61.461 4.42e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01192 K01194 - gmx:547539 736.487