Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01186 ATGAAGAACTTGTACTGGTTTAAAGAAATTTCTAACAACGTGAGATCAGGGAGAAGGCTTTCACTTGGGGAGTATAAGCGAGCGGTGTCATGGTCCAAGTATTTGATCTCTTCGGGGGCAGCCATAAAGGGAGAGGCTGAAGAAGAATGGAGTGCTGATCTGTCTCAGTTGTTCATTGGGTCCAAGTTTGCTTCTGGGAGGCATAGCAGGATCTACAGAGGCATCTACAAGCACATGGACGTTGCAATTAAGCTGGTGAGTCAACCGGAGGAGGATGAGGACTTAGCCGTTTCGCTAGAGCAGCAATTCACTTCTGAGGTTAATTTGCTCTTTCGATTGCGCCATCCAAATATCATCACCAATGAAAGGCCTCCGTTACCATGTGAGTGTCCACGGGCATTTAGTCATCTGATAAACAGATGCTGGTCAAGCAATCCAGATAAAAGACCACATTTTGATGAGATAGTTGCGATTTTGGAGAGCTATAGTGAAGCACTTGAGGAGGATCCACAGTTTTTAACCACTTACAAACCACGTCCTAATAATCTTATTCTCAGATGCTTACCCAAATTGATTCTGGTTCCTAAGGAATCAAATATGGGAGTTAACGATGAAAGGGGAGTAAATGTAATGAATAGGTTTGGTTACACTTCACCCTTTAACGGAACCTCAACTCCAAGGAGTTCCTTGAGCGAACAAAGACGCCAAAGTATTGGTCCATCTTTCAATGTTGAGAGGGTGGTGGACAGTCCCGCAATTCAACGGCTACATGGAAATGCTTGTGACATGCAGAGTTCTGATCAATCATCCTCAAGCCGAATTTTTGGATACAATGGCAGTGAGTCTAGATCCTATTCAAAATTGTTCTATCTATTTGGAGGGCAGAAGAGAGAGGTGGAGATAGTGAAAGATGAAGTGGAAGAAAAGAAACAAGGGAATTCTAGCAGCGAAGCTCCTTCCACAATGAGTAGTTCGTCCAATGATAAGAAGCTAGACAAGGTGGGTGAGACTCAAACAAGAACTTTAAGCTGTGTTGTTTCACAAAAACCAAAGAAAGTATCACAATCACAATTCTTCCCAGAAACCCCATCAAAGTTAAGATCACCGATAGCAAAAAGCCCTACTGCAAAACCTCCTATTGATAGGAAGAATGACAGCCCTTTGAGAAAACAGAACACAGGTGTTCACCGTGTGAAAAAAACTGCCGGTGGAAGATCACTGTCACAAGGTCAGATTGATATTTCCTCTGGGTCAGCATTGGATAAGCCTGAACTGGGACAAGCTTTACTAAACCAAGCAAGGGACATAATTTCATCTGGAAATAATCCGACCAGAGCTCTTGAATTAGCCCTTCAAGCAAAGAAATTGTTTGAGAGAACTACTGCTTATGGGAGACCAAATTTGGATATGGCCATGTGTCTACATGTTAATGCAGTAATACATTGCACTTTGGGCAATTTCAATGAAGCAATTTCGCTAGTAGAGCGCTCAATAGAGATTCCTGTTATTGAGGAAGGCCAACAGCACGCCATTGCTAAATTTGCTGGCCACATGCATCTAGGAGACATTTATGCTATGTCGGGCCAGCTGGAGAAGTCAATTAAGTGCTACACCGAAGGGTTAGAATTGCAAAGGAAGGTTTTGGGAGAAACAGACCCAAGAGTTGGCGAAACGTGTAGGTATGTGGCTGAGGCTAACTTTCAAGCCTTGCAATTTGAGGAGGCGGAGAGGATGTGCCAAATTGCCCTTGATATCCACAGAGCAAACGGTTCACCCTCATCTCTTGAAGAGGCAGCTGATAGGAGGCTGATGGGCCTTATATGTGAAGCAGATGGAAAACACGAAGCAGCCCTGGAGCATCTTGTGTTGGCCAGCATGGCAATGGTAGCAAATGGGCAAGAAGTGGAAGTGGCATTTGTTGACTGCAACATTGGAGACACGTATTTATCCTTGGCTAGATATGATGAGGCCATCTTTGCATATCAGAGAGCATTGAAAGTTTTCAAGATCCACAAAGGTGAGAACCATCCTGCTGTGGGGTCAGTTTTTGTACGTCTGGCTGACTTGTATAGCAGAACATGGAAGATTAGGGAATCAAAATTATACTGTGAGGAGGCACTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTCCAGAGGAGACTGCTAACGGTTTTATGAATGTATCAGCCATCTACGAGTCGATGAATGAGCTAGAAGAGGCACTTAAATTACTTCACAAGGCACTAACCATACTTAATGATGTCTCTGGTCAGATAAACACCATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTACTTTGTGTTGAAGAACTACACTGAATCTTATAACTGTTTCAAGAATGCCGTGTCCAAGCTTCGTGCTACTGGGGGAAAGAAATCAGCCTTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAACTCCATTCCCTGAATGAGGCTGCAGCATTATTTGAAGAAGCAAGGGCCATTTTGGAACAAGAGAATGGACCCTATCACACTGAAACACTTGGAGTATGTGGCAATCTTGCTGGAACATATGATGCAATTGGAAGGCTGGATGAGGCAATTGAAATTCTTGAAAACATTGTGGTAATGAGGGAAGAAAAGCTTGGGACTGCAAATCCTGATGTTGCTGATGAAAAGAGAAGGTTGGAGGAGTTGTTGAAGGAAACAGGGAAAGTCCGGAACAGAAAAACGAAGTCACTGGAGAACCTTTTTGATCATGATTATATATGA 2772 0.4343 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLISSGAAIKGEAEEEWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVSLEQQFTSEVNLLFRLRHPNIITNERPPLPCECPRAFSHLINRCWSSNPDKRPHFDEIVAILESYSEALEEDPQFLTTYKPRPNNLILRCLPKLILVPKESNMGVNDERGVNVMNRFGYTSPFNGTSTPRSSLSEQRRQSIGPSFNVERVVDSPAIQRLHGNACDMQSSDQSSSSRIFGYNGSESRSYSKLFYLFGGQKREVEIVKDEVEEKKQGNSSSEAPSTMSSSSNDKKLDKVGETQTRTLSCVVSQKPKKVSQSQFFPETPSKLRSPIAKSPTAKPPIDRKNDSPLRKQNTGVHRVKKTAGGRSLSQGQIDISSGSALDKPELGQALLNQARDIISSGNNPTRALELALQAKKLFERTTAYGRPNLDMAMCLHVNAVIHCTLGNFNEAISLVERSIEIPVIEEGQQHAIAKFAGHMHLGDIYAMSGQLEKSIKCYTEGLELQRKVLGETDPRVGETCRYVAEANFQALQFEEAERMCQIALDIHRANGSPSSLEEAADRRLMGLICEADGKHEAALEHLVLASMAMVANGQEVEVAFVDCNIGDTYLSLARYDEAIFAYQRALKVFKIHKGENHPAVGSVFVRLADLYSRTWKIRESKLYCEEALKIYENPMPGVPPEETANGFMNVSAIYESMNELEEALKLLHKALTILNDVSGQINTIAGIEAQMGVMYFVLKNYTESYNCFKNAVSKLRATGGKKSAFFGTVLNQMGLACVQLHSLNEAAALFEEARAILEQENGPYHTETLGVCGNLAGTYDAIGRLDEAIEILENIVVMREEKLGTANPDVADEKRRLEELLKETGKVRNRKTKSLENLFDHDYI 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01186 923 MobiDBLite consensus disorder prediction 353 410 - -
Vian1g01186 923 MobiDBLite consensus disorder prediction 217 240 - -
Vian1g01186 923 Coils Coil 889 909 - -
Vian1g01186 923 Gene3D Tetratricopeptide repeat domain 413 623 IPR011990 GO:0005515
Vian1g01186 923 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 244 920 - -
Vian1g01186 923 Gene3D Phosphorylase Kinase; domain 1 46 120 - -
Vian1g01186 923 Coils Coil 819 839 - -
Vian1g01186 923 Gene3D Tetratricopeptide repeat domain 796 902 IPR011990 GO:0005515
Vian1g01186 923 ProSiteProfiles TPR repeat profile. 638 671 IPR019734 GO:0005515
Vian1g01186 923 Gene3D Tetratricopeptide repeat domain 624 795 IPR011990 GO:0005515
Vian1g01186 923 SMART tpr_5 638 671 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 723 756 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 471 504 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 556 589 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 848 881 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 764 797 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 680 713 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 806 839 IPR019734 GO:0005515
Vian1g01186 923 SMART tpr_5 514 547 IPR019734 GO:0005515
Vian1g01186 923 MobiDBLite consensus disorder prediction 305 335 - -
Vian1g01186 923 MobiDBLite consensus disorder prediction 313 328 - -
Vian1g01186 923 ProSiteProfiles TPR repeat profile. 723 756 IPR019734 GO:0005515
Vian1g01186 923 Pfam MalT-like TPR region 441 635 IPR041617 -
Vian1g01186 923 Coils Coil 736 756 - -
Vian1g01186 923 SUPERFAMILY Protein kinase-like (PK-like) 59 166 IPR011009 -
Vian1g01186 923 Gene3D Transferase(Phosphotransferase) domain 1 121 178 - -
Vian1g01186 923 SUPERFAMILY TPR-like 675 876 IPR011990 GO:0005515
Vian1g01186 923 MobiDBLite consensus disorder prediction 217 241 - -
Vian1g01186 923 Pfam Tetratricopeptide repeat 807 872 - -
Vian1g01186 923 Pfam Tetratricopeptide repeat 640 712 - -
Vian1g01186 923 SUPERFAMILY TPR-like 469 751 IPR011990 GO:0005515
Vian1g01186 923 MobiDBLite consensus disorder prediction 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01186 Vian-Chr1 12727560 12735428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01186 121 168 MAP Kinase Kinase Kinase AT1G62400 62.500 7.10e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian1g01186 TPR_MalT 3.3e-08 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01186 - - gmx:100813461 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01186 1 12727560 12735428 Vian4g00846 4 11433576 11436457 ECH
Vian1g01186 1 12727560 12735428 Vian1g01186 1 12727560 12735428 ECH
Vian1g01186 1 12727560 12735428 Vian4g00846 4 11433576 11436457 PCT