Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01181 ATGAAGAACACAAACACTACTGTCACTGCTTCATCAAAACTTGACCGCAAAACCATTGAAAGGAACCGCAGAATCCATATGAAAGCTCTCTGCTTCAAGCTTGTTTCAATTATCCCTTCCCAGTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGACCAGCTCGATCTTGCAGCCACGTATATAAAGCATCTGAGAGAAAGAATAGAGAAACTGAAGGGGGAGAAGGAGCAAGCCATGAAAATGATGAGAACAACCCAAACCAATAACGGGATTTTCAATATTGACGCTGATCAATTGCCTCTACTTGAGATAAAGGAGTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGGTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGTTGAAGTTGTCACTGCCAACTTCTCTACTGTTGATAATAAGATCTTTTACACAGTTCATGCTCAGGTTAAAATCTCAAGAGTTGGCGTTGAACCAACGAGGGTATATCAAAAGCTTCAGGAATTGATTGCACCACTAGAAAGCTGGTAG 564 0.422 MKNTNTTVTASSKLDRKTIERNRRIHMKALCFKLVSIIPSQYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMKMMRTTQTNNGIFNIDADQLPLLEIKELGSGIEVMLISGVNKNFMLYEVISVLEEEGVEVVTANFSTVDNKIFYTVHAQVKISRVGVEPTRVYQKLQELIAPLESW 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01181 187 Gene3D - 2 92 IPR036638 GO:0046983
Vian1g01181 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 82 IPR036638 GO:0046983
Vian1g01181 187 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Vian1g01181 187 FunFam Transcription factor bHLH162 3 93 - -
Vian1g01181 187 Coils Coil 63 90 - -
Vian1g01181 187 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 180 - -
Vian1g01181 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01181 Vian-Chr1 12650554 12651377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01181 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 31.937 2.21e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g01181 HLH 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01181 - - vun:114179389 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01181 1 12650554 12651377 Vian4g00841 4 11244615 11245671 ECH
Vian1g01181 1 12650554 12651377 Vian1g01181 1 12650554 12651377 ECH
Vian1g01181 1 12650554 12651377 Vian4g00841 4 11244615 11245671 PCT