Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01179 ATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCGGATCAGATTGATCTGAAGAGCATAGATGAACAGTTGGAGAGGCACCTCAACAAGGTGCTCACCATAGATAAGAAAAAGCGTTCTGATGAGGACGAAGATGCTGATCAGGTTCATGTTCACACCAGTGCCACTGCCTCTCCCAAATTCAGACCCGCCTCTGCTAGGCTAAGTCTCAAGAAGCAAAAGCAGGAGTGGGAGATTGATCCTTCTAAACTCATCATCAAAAGTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGTGTCTATGATACTCAAGATGTTGCTGTGAAATTGTTGGACTGGGGTGAGGAAGGACAAAGGACAGAAGCAGAAATTGCCTCCCTGAGAGCAGCTTTTACACAGGAAGTTGTTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTGCAGATACAAACTGATAATGGTCTGATTGGCATGCCAAGCAATTTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGAAATCTGAAATCATACCTAATAAAGAACAGGAGGAGGAAGCTAGCTTTTAAGATTGTCATTCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTGAAGACAGAAAACATGCTGTTGGACAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAGGCATCAAATCCTAACGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACATCAGCCGTTGTTCGACAGAATTTGAGACCAGAAATGCCAAGATGTTGCCCAAGTTCTCTGGCAAATGTCATGAAGAAATGCTGGGATGCCACTCCAGATAAGCGACCAGAGATGGATGAGGTAGTTTCCATGCTGGAAGCCATTGACACAACCAAAGGTGGAGGTATGATCCCTCATGATCAGCAACAGGGTTGTTTTTGCTTCCGCAAGCATAGAGGGCCTTGA 1161 0.4444 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRSDEDEDADQVHVHTSATASPKFRPASARLSLKKQKQEWEIDPSKLIIKSVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEIASLRAAFTQEVVVWHKLDHPNVTKFIGATMGSSELQIQTDNGLIGMPSNFCCVVVEYLAGGNLKSYLIKNRRRKLAFKIVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEMPRCCPSSLANVMKKCWDATPDKRPEMDEVVSMLEAIDTTKGGGMIPHDQQQGCFCFRKHRGP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01179 386 FunFam Kinase suppressor of Ras 1 72 167 - -
Vian1g01179 386 Gene3D Transferase(Phosphotransferase) domain 1 184 375 - -
Vian1g01179 386 Pfam Protein tyrosine and serine/threonine kinase 85 357 IPR001245 GO:0004672|GO:0006468
Vian1g01179 386 CDD STKc_MAP3K-like 89 357 - -
Vian1g01179 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vian1g01179 386 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Vian1g01179 386 PRINTS Tyrosine kinase catalytic domain signature 180 193 IPR001245 GO:0004672|GO:0006468
Vian1g01179 386 PRINTS Tyrosine kinase catalytic domain signature 218 236 IPR001245 GO:0004672|GO:0006468
Vian1g01179 386 PRINTS Tyrosine kinase catalytic domain signature 328 350 IPR001245 GO:0004672|GO:0006468
Vian1g01179 386 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01179 386 Gene3D Phosphorylase Kinase; domain 1 71 166 - -
Vian1g01179 386 SUPERFAMILY Protein kinase-like (PK-like) 61 357 IPR011009 -
Vian1g01179 386 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 360 - -
Vian1g01179 386 SMART serkin_6 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01179 386 MobiDBLite consensus disorder prediction 34 49 - -
Vian1g01179 386 FunFam Serine/threonine-protein kinase HT1 183 368 - -
Vian1g01179 386 MobiDBLite consensus disorder prediction 34 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01179 Vian-Chr1 12617113 12621056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01179 1 318 MAP Kinase Kinase Kinase AT5G50000 80.818 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian1g01179 PK_Tyr_Ser-Thr 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01179 - - gmx:100807921 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01179 1 12617113 12621056 Vian1g01179 1 12617113 12621056 ECH