Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01177 ATGACTCCAAGGGATCGCCGCATCTTATCATTCCCGGCGGTTCACCCTTGCGGCGACATATCTCCGCCCACACTTCTCGCCTCTCTCATCACTCTCTCCCAGTCCGTATGCAACTTTCAACCCGAATTGTTCCCTACTCAACGTCGCAACGCACGAGAAACGATACGCCAAATCGGTATACTCTTAGTTCTCCTTCAAGAAATTCGAGACCGCGGTTTATCAATCCCTCACTCCACCATCCTCTGCCTCGCAGAACTCCACTTCGCCTTGCAAAAAATCAACTTCTTGATGCAAGATTGCACACTCCAAGGCGCGCGCCTTTTAATGCTTTCCAAATCGCAACACGTCGCATCCCAGTTCCGCTGCCTCATTCGCGCCGTCGCCACCTCCCTCGACGTTTTGCCTCTTCAAGAGTTCGACGTGTGCGCTGAAGTCAGGGAATTGGCGGAGTTAGTAACGAGGCAAGCGCGGAAAGCCAAGTTCGAAGTGGACCCCAGCGACGCGCGAGCGTGCAAAACTCTCCACAATGTTCTTCGGCTGTTCGCGAGGGGAACGGAACCTGACCTCAGCTCCATGCAGGGAATCATCGACTACCTCCAAATTAGAACATGGATGGATTGCAATAAAGAGATTAGTTTCCTAGAAGAAGAAATCAGCTTAGAGTGTCGCGATCGTGACGAGCGAGAGGTTCCGTTGCTCAGTAGCTTGCAGCAGAAGGCCGCTTACGAGATTCGCGTGCTGGCTAGAACCAGCATTTTCAATAGGTCTTGTTTGATTGAAGTGGGAGCAGTGCCTCCTCTACTAGAACTTTTAGCATCTGCGTCTAACGATAAACCCACTCAAGAGAACGCAATCTCCGCTCTATTGAAGCTCTCTAAACATCCGAATGGACCTAAAAATATCATAACCAGTGGGGGCCTAAACGTAATTCTCTCCGTGCTGAAGAACGGAGTTAGCCTCGAAATTCGTCAAGTAGCTGCTGCCATCATGTTTTATCTCTCTTCGGTGAAAGAGTACCGGAAAATAATAGGTGAGAACCCCGAGGTGATTCCGGCTTTAGTGGAGTTAGTTAAAGAAGGAACAACCTGCGGGAGAAAGAACGCCGTGGTTGCCATTTTCGGGTTGCTTTTGCTTCCTAGGAATCACCAAAGGGTGGTCGCGGCTGGAGCAGTTCCTGCGCTGCTTGACATTTTGGCTTCTTCAGATAAGGAGGAGCTTGTGACTGAAGCATTGGCGGTTCTTGCAGCGCTGGCTGAGAATGCTGACGGGGCGCGTGCGATATTGGAAGGTTCGGCGTTGGCGTTAATTACGGGAATGCTGCGATCTGTGACGTCAAACGTGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTGAATATTGGGGCGGAGGTGGTGGCTGTTCTGGCGAAGGACCCTTCGGTGATGCCATCGCTTTATTCGCTTGTGACGGGTGGGAGTAGTCAGGGCGCAAAGAAAGCGCGGTTCCTGATTAAAGTTATACAGGACTTCCACGAGACTAGAACTTCTGGACTCAAGGGTTCCTCTCCTCCGCAGGAACGATCGCTTCACGTTTGGTGA 1587 0.5123 MTPRDRRILSFPAVHPCGDISPPTLLASLITLSQSVCNFQPELFPTQRRNARETIRQIGILLVLLQEIRDRGLSIPHSTILCLAELHFALQKINFLMQDCTLQGARLLMLSKSQHVASQFRCLIRAVATSLDVLPLQEFDVCAEVRELAELVTRQARKAKFEVDPSDARACKTLHNVLRLFARGTEPDLSSMQGIIDYLQIRTWMDCNKEISFLEEEISLECRDRDEREVPLLSSLQQKAAYEIRVLARTSIFNRSCLIEVGAVPPLLELLASASNDKPTQENAISALLKLSKHPNGPKNIITSGGLNVILSVLKNGVSLEIRQVAAAIMFYLSSVKEYRKIIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVVAAGAVPALLDILASSDKEELVTEALAVLAALAENADGARAILEGSALALITGMLRSVTSNVGKEHSASILLSLCVNIGAEVVAVLAKDPSVMPSLYSLVTGGSSQGAKKARFLIKVIQDFHETRTSGLKGSSPPQERSLHVW 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01177 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 432 IPR000225 GO:0005515
Vian1g01177 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 262 306 IPR000225 GO:0005515
Vian1g01177 528 FunFam RING-type E3 ubiquitin transferase 233 514 - -
Vian1g01177 528 Pfam Armadillo/beta-catenin-like repeat 254 292 IPR000225 GO:0005515
Vian1g01177 528 SUPERFAMILY ARM repeat 235 501 IPR016024 -
Vian1g01177 528 Gene3D - 165 509 IPR011989 -
Vian1g01177 528 PANTHER U BOX DOMAIN-CONTAINING 76 222 - -
Vian1g01177 528 SMART arm_5 250 293 IPR000225 GO:0005515
Vian1g01177 528 SMART arm_5 294 335 IPR000225 GO:0005515
Vian1g01177 528 SMART arm_5 378 419 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01177 Vian-Chr1 12601158 12603206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01177 239 528 U-box Gene Family AT1G10560 43.144 2.88e-63 217
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01177 1 12601158 12603206 Vian1g01177 1 12601158 12603206 ECH