Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01176 ATGGCTGCTCGCAGACTTTCCTGGTTACTCTCTCGGTCTCTCTCTTCCCATTCTTCTGGAGCTTCTTTGTTTCACTCATTAGGAAGAAACTCCGGAGGGTGGAGAAACATCAATAGATTTAGCACGTCTGCAGCAGTTGAGGACCTAATCACTCCACAAGTTCCAATACGTTATACACAGCACCTGATAAATGGACGATTTGTGGATGCTGCATCAGGGAAAACATTTCCAGCTTATGACCCGCGAACGGGAGAAGTGATTGCTAATGTTGCTGAAGGGGATGCTGAAGACATCAACCGTGCAGTATCAGCAGCTCGCAAGGCCTTTGATGAAGGGCCTTGGCCTAAAATGAGTGCATATGAAAGAAGTCGAATATTGCTTCGCTTTGCTGATTTGGTTGAGAAACACAACGATGAGCTAGCTGCTCTGGAGACATGGAACAATGGAAAGCCTTATGAACAGGCTGCCAAGTCAGAAGTTCCATTGTTTGTGCGTTTATTTCACTATTATGCTGGTTGGGCGGATAAAATTCACGGGTTGACCGTCCCAGCTGATGGAGATTATCATGTTCAGACATTGCATGAACCAGTTGGTGTAGCAGGACAAATTATACCTTGGAACTTTCCTTTAATTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCATGTGGTAATACCATTGTCCTGAAGACCGCTGAGCAAACACCACTAACAGCTCTCTTTGTTGCAAAACTATTTCATGAGGCTGGTCTTCCGGAAGGTGTTCTGAATGTAGTTTCTGGGTATGGTCCAACTGCTGGTGCAGCTCTTGCAAGTCATATGGACGTGGACAAGCTAGCATTTACTGGATCGACAGATACTGGAAAAGTTGTACTTGAATTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTGGAGCTTGGAGGGAAATCACCTTTCATAGTGTTCGACGATGCTGATGTTGACAAGGCTGTTGAACTTGCACACTTTGCTCTGTTCTTTAATCAGGGGCAATGTTGTTGTGCTGGGTCTCGTACTTTTGTACATGAGCGTGTCTATGATGAGTTCTTGGAGAAATCAAAGAAACGAGCTTTGAGACGTGTTGTTGGAGATCCATTCAAGAAAGGTGTTGAACAAGGTCCTCAGATTGATGGAGAACAATTTGAGAAAGTCCTTGGGTACATAAAGTCTGGGATTGAAAGCAATGCTACCCTTGAATGTGGGGGGGATAGATTGGGCTCGAAAGGATTCTTTATCCAGCCAACTGTCTTCTCAAATGTGCAGGATGACATGTTGATAGCACAAGACGAAATCTTTGGCCCAGTTCAGTCCATCTTGAAATTCAAGGACACTGATGAAGTAATTGAACGGGCAAATAGAACACGTTATGGTCTAGCGGCAGGCGTGTTTACTAAGAACGTGGACACGGCCAACAAATTGATGCGGGCACTAAGAGCTGGAACTGTGTGGATCAATTGCTTTGATGTTTTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGTGGTATTGGCAGGGAGAAAGGAATCTATAGTCTTCACAACTACCTCCAGGTGAAAGCTGTTGTCACACCATTGAAGAATCCTGCTTGGATATAG 1620 0.4469 MAARRLSWLLSRSLSSHSSGASLFHSLGRNSGGWRNINRFSTSAAVEDLITPQVPIRYTQHLINGRFVDAASGKTFPAYDPRTGEVIANVAEGDAEDINRAVSAARKAFDEGPWPKMSAYERSRILLRFADLVEKHNDELAALETWNNGKPYEQAAKSEVPLFVRLFHYYAGWADKIHGLTVPADGDYHVQTLHEPVGVAGQIIPWNFPLIMFAWKVGPALACGNTIVLKTAEQTPLTALFVAKLFHEAGLPEGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVFDDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKSKKRALRRVVGDPFKKGVEQGPQIDGEQFEKVLGYIKSGIESNATLECGGDRLGSKGFFIQPTVFSNVQDDMLIAQDEIFGPVQSILKFKDTDEVIERANRTRYGLAAGVFTKNVDTANKLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVTPLKNPAWI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01176 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 44 529 - -
Vian1g01176 539 Pfam Aldehyde dehydrogenase family 67 529 IPR015590 GO:0016491
Vian1g01176 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Vian1g01176 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620
Vian1g01176 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 334 - -
Vian1g01176 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
Vian1g01176 539 CDD ALDH_F2BC 56 531 - -
Vian1g01176 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 527 IPR016162 GO:0016491
Vian1g01176 539 SUPERFAMILY ALDH-like 53 533 IPR016161 GO:0016491
Vian1g01176 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
Vian1g01176 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01176 Vian-Chr1 12588772 12592689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01176 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 80.741 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01176 K00128 - gmx:100811501 945.266