Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01170 ATGCGCAACATTCAGATTGAAACGAAGCAAAACGGTGATGTGAAGTACTCGTATGAGTCATATCCTCAATCTCCTTTCTCAGCTTATCAAGCTCCAAACGATGGTAACACTACCAACGAGCAAGAATCAACAACGCCGTCATCTCTCAGCAGAATCAGTCCACTCATTTTACTGGTCATAATTATTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAACCTCTTCATCAATCTACAACTCCAACAGGTTCCACGAATCCATGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGCTTGCACGATTCAGGTATAGACCAAGCCCTCATAGACGCTCTACCAGTTTTCCATTACCAAGACTTGCTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACACACGCCTTTCACATGACCTGTCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCGAACTACGTGGAGAATCAAAATGAAAATGAAAATCCTATTTTGTTTAATGTTGGTATTGGGAATTCAAATTCCTTGGTTCTGCCAAGTGGGGTGAGAGGTGAGGAAGAGAACGGGTTTTCAGAGAGTGAAAGATCAGTTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAACAATGGGATGGAGTTAGGGAATGGAGATAGTTGTAGCTTGAACGAGAGAAGATGCTACTCCATGGGTTCATATAGGTATGTGGTTCGTGATTCCAATCTGCAAGTGGTTTTATCTGAATCTGGTGATGTTTCAGAAAATGAGAATGTGAAGGGAAAGAGGATAAGCGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACCATACATTTCATGCTTCTAATGCACCTTTCCCTTAA 1008 0.4365 MRNIQIETKQNGDVKYSYESYPQSPFSAYQAPNDGNTTNEQESTTPSSLSRISPLILLVIIILAVIFFVYGLVHLVLWFFMKTPTSSSIYNSNRFHESMRSRVLQRQLQQLFRLHDSGIDQALIDALPVFHYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMTCLDTWLLSNSTCPLCRASLSNYVENQNENENPILFNVGIGNSNSLVLPSGVRGEEENGFSESERSVGKRVFSVRLGKFRNNGMELGNGDSCSLNERRCYSMGSYRYVVRDSNLQVVLSESGDVSENENVKGKRISDSTKGESFSVSKIWLWSKNHTFHASNAPFP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01170 335 Pfam Ring finger domain 143 186 IPR001841 -
Vian1g01170 335 FunFam RING-H2 finger protein ATL46 106 191 - -
Vian1g01170 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 196 IPR013083 -
Vian1g01170 335 SMART ring_2 144 185 IPR001841 -
Vian1g01170 335 CDD RING-H2_EL5-like 143 186 - -
Vian1g01170 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 319 - -
Vian1g01170 335 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Vian1g01170 335 SUPERFAMILY RING/U-box 123 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01170 Vian-Chr1 12549258 12550265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01170 50 332 C3H Transcription Factor Family AT2G18650 40.909 3.82e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01170 - - vum:124828898 627.091