Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01162 ATGGCATCATTTGCAGGCACCACCCAGAAGTGCACAGCTTGTGAAAAGAAAGTGTATTGGGTGGAACAGCTTACTGCTGACAACAAGGTGTACCATAAATCGTGTTTCAGATGCCACCACTGCAAGGGCACCCTCAAGCTGGGTAACTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCCAGAGTTGAAAGATCTGCTGATCAGGTCCAAAACAACAAGGTTTCAAGATTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGGAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGTGGTTGTGTAATTAGCCCTTCAAATTATGTTGCCCATGAACATCTTCTCTATTGCAGACATCACCATACTCAGCTCTTCAAGCAAAAGGGTAACTTCAGTCAATTAGTGAAGCATGAAAATCTTCAACTCACCACTCAAAACACCACACAACATCCAACTAATGGCACTGCAACTTCACCTCATGACTCTTCTTAG 612 0.4232 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRIARVERSADQVQNNKVSRLFSGTQEKCVVCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHLLYCRHHHTQLFKQKGNFSQLVKHENLQLTTQNTTQHPTNGTATSPHDSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01162 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vian1g01162 203 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vian1g01162 203 MobiDBLite consensus disorder prediction 183 203 - -
Vian1g01162 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Vian1g01162 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Vian1g01162 203 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Vian1g01162 203 SMART lim_4 108 160 IPR001781 -
Vian1g01162 203 SMART lim_4 10 62 IPR001781 -
Vian1g01162 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Vian1g01162 203 FunFam LIM domain and actin-binding 1 5 75 - -
Vian1g01162 203 PANTHER OS06G0237300 PROTEIN 2 94 - -
Vian1g01162 203 FunFam LIM domain and actin-binding 1 103 173 - -
Vian1g01162 203 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vian1g01162 203 CDD LIM2_SF3 109 169 - -
Vian1g01162 203 Gene3D Cysteine Rich Protein 103 173 - -
Vian1g01162 203 Gene3D Cysteine Rich Protein 5 75 - -
Vian1g01162 203 Pfam LIM domain 109 164 IPR001781 -
Vian1g01162 203 Pfam LIM domain 11 65 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01162 Vian-Chr1 12476644 12479374 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vian1g01162 LIM 3.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01162 K09377 - gmx:100792627 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01162 1 12476644 12479374 Vian1g01162 1 12476644 12479374 ECH
Vian1g01162 1 12476644 12479374 Vian4g00824 4 10835316 10837404 PCT