Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01152 ATGGATGGAAACAACTACAATTCCTGGGCTGATCAATGGGACGATGGACCTGATCCTGTGACGGTTGGTTCCAGCAATAAAAACAGCAACGACAAGACAACCAAGTACAAGCAAAAGGTCGGAGAGGGTTTTGGCAAGACCAAAGCAGTCGCCTCCACCGGTACAGAGACACGCAACAAGATGTCCATCGCAATTCCCAACCGTCAATTGTTCATAGACGGTGACTGGAAAGTCCCTGCCCTCGGCAAACGGATTCCCATCATCAACCCTTCCACACAACAGATCATCGGGGATATCCCAGCCGCTACTAAGGAAGATGTCGACGCCGCCGTCGCCGCCGCCAAAGCCGCCCTTTCCCGCAACAAAGGCGCCGATTGGGCCTCCGCTTCCGGCGCTGTTCGGGCCCGCTATCTCCGTGCCATCGCTGTCAAGGTCACCGAGAAAAAACCCGAGCTCGCAAAACTAGAAGCCATCGATTGTGGAAAACCGCTGGATGAAGCTGCCTGGGACATCGACGATGTTGCTGGTTGCTTTGAGTTCTACGCTGATCTGGCTGAAAAATTGGACTCCAAGCAAAAGGCTCCGGTGTCTCTTCCCATGGACACATTCAAGAGTTACGTTCTTAAGGAGCCAATTGGGGTTGTAGGATTAATAACTCCCTGGAATTATCCTATGTTGATGGCTACGTGGAAGGTTGCTCCTGCTCTGGCAGCGGGTTGTGCTGCAATATTGAAGCCCTCTGAGTTGGCATCTGTGACCTGCTTGGAGCTAGGTGAGATTTGCAAAGAAGTGGGGCTTCCTCCTGGTGTGTTGAACATTCTCACTGGATTAGGACCTGAAGCTGGTGCTCCATTAGCAGTCCATCCTGATGTCGACAAGATTGCCTTTACTGGAAGCTCTGCAACGGGGAGCAAGATTATGACGGCCGCAGCCCAGCTGGTCAAGCCTGTTTCACTAGAGCTTGGTGGAAAAAGTCCAATCGTTGTCTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTACATGAAAGTATAGCAACAGAGTTTTTGAATAGGATTGTGAAATGGATAAAAAACATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGACTGGGCCCTGTTGTTAGTGAGGGACAGTATGAAAAAGTATTGAAGTTTATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGGTCTCGCCCTGAGCATCTAAACAAAGGATTCTTCGTTGAACCGACTGTCATAACTGATGTGACTACCTCTATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTTCTCTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCAAATGATACTGTATATGGCTTAGGTTCTGCTGTAATATCAAATGATTTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCGTTAAACGCAGCGGCTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTAAGTGTGAAGCAAGTGACTAAGTACATCTCTGATGAACCGTGGGGCTGGTACCACTCTCCTTCAAAGATGTGA 1692 0.4793 MDGNNYNSWADQWDDGPDPVTVGSSNKNSNDKTTKYKQKVGEGFGKTKAVASTGTETRNKMSIAIPNRQLFIDGDWKVPALGKRIPIINPSTQQIIGDIPAATKEDVDAAVAAAKAALSRNKGADWASASGAVRARYLRAIAVKVTEKKPELAKLEAIDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDSKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPMLMATWKVAPALAAGCAAILKPSELASVTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLAVHPDVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIVVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISNAKSEGATILTGGSRPEHLNKGFFVEPTVITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTKYISDEPWGWYHSPSKM 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01152 563 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 84 543 IPR016162 GO:0016491
Vian1g01152 563 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 72 337 - -
Vian1g01152 563 FunFam Betaine aldehyde dehydrogenase 323 514 - -
Vian1g01152 563 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 319 326 IPR029510 GO:0016491
Vian1g01152 563 SUPERFAMILY ALDH-like 59 546 IPR016161 GO:0016491
Vian1g01152 563 CDD ALDH_F10_BADH 87 547 - -
Vian1g01152 563 Pfam Aldehyde dehydrogenase family 83 545 IPR015590 GO:0016491
Vian1g01152 563 MobiDBLite consensus disorder prediction 1 36 - -
Vian1g01152 563 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 347 358 IPR016160 GO:0016491
Vian1g01152 563 PANTHER ALDEHYDE DEHYDROGENASE 60 562 - -
Vian1g01152 563 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 327 518 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01152 Vian-Chr1 12377152 12386920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01152 61 561 Aldehyde Dehydrogenase Gene Family AT1G74920 81.038 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01152 K00130 - gmx:100170731 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01152 1 12377152 12386920 Vian1g01152 1 12377152 12386920 ECH
Vian1g01152 1 12377152 12386920 Vian4g00812 4 10662538 10668568 PCT