Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01151 ATGACTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCTTAGGACTTTTGTGTACCAATTTCTTGAGTCTCTATAACCGAGACACAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGTTTAGGAGTAGAGAGAAGACGGATCTATGACATTGTTAATGTTCTCGAAAGCATTGGGGTTCTCTCGAGGAAAGCAAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTTACCCTTCGGGAGCTAAAAGAGGATGGGCTGAGGGAGAACTCCAGTTCCTTGCGCGGGTCCACCAACGACGACATGTATAAAGTTTCTGACGACGAAGATGACGAAGAAACACAGTCCAATGCCGCAACTGGAAGTCAAAACGACAAGTTGAACCCTAAATCTACTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTCGTGTGCTCTAATGTTGAGTTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGACGCTCACAACACCTCAATAATGAGAACAAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCTATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCGTTCAGGTGGTTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGAGTCTAGGAAAAGGGCGTTTGGGAGTGATATTACAAACATCAGCTTTGAGAGGAATAAGGTGGAACTATTCACAAATGGAGACTTGAATTCTAATCCCAAGAAGCTAAAAATTGAAAATGATAGAGGGCTGGATCAGGCAGATGAAAACAATTTAAAACAAGGTACAAAACAAACTTCGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTGCCCGGAGTTGGAGCCTCTGGGAATAATAATGTAAAGCAGGTGCATGACTGGGACGGTCTAGTAACTACACATAGCCCTCAGTATCAAAACGAAGCTTTGAGAGATCTCTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCAAAAAGACCATTAAAAATTTTGTAA 1146 0.4276 MTSSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRENSSSLRGSTNDDMYKVSDDEDDEETQSNAATGSQNDKLNPKSTQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNESRKRAFGSDITNISFERNKVELFTNGDLNSNPKKLKIENDRGLDQADENNLKQGTKQTSKSYQFGPFAPACVPGVGASGNNNVKQVHDWDGLVTTHSPQYQNEALRDLFSHYMEAWKSWYSEIAAKRPLKIL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01151 381 MobiDBLite consensus disorder prediction 126 145 - -
Vian1g01151 381 FunFam E2F transcription factor-like E2FE 147 234 - -
Vian1g01151 381 Gene3D - 147 233 IPR036388 -
Vian1g01151 381 Gene3D - 11 83 IPR036388 -
Vian1g01151 381 FunFam E2F transcription factor 8 11 83 - -
Vian1g01151 381 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Vian1g01151 381 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Vian1g01151 381 MobiDBLite consensus disorder prediction 98 151 - -
Vian1g01151 381 PANTHER TRANSCRIPTION FACTOR E2F 9 342 IPR015633 GO:0000978|GO:0006357
Vian1g01151 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Vian1g01151 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Vian1g01151 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Vian1g01151 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01151 Vian-Chr1 12370042 12373499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01151 11 378 E2F-DP Transcription Factor Family AT3G48160 52.800 4.35e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vian1g01151 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01151 K09391 - gmx:100795252 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01151 1 12370042 12373499 Vian1g01151 1 12370042 12373499 ECH
Vian1g01151 1 12370042 12373499 Vian4g00810 4 10631209 10637773 PCT