Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01149 ATGGCCATCACCGGTGAGATTTTCCGGCAAAACTTAACGGAATTGCTCGAGGAGTCTCCTTCTGGTTCGCCAGAGCTTCACGTTCTTGCCGTCGATGACAGCCTCGTTGATCGCCATGTCATCGAACGCTTGCTCAAGGTTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGTGCTCTTCAGTATCTGGGCTTGGACGGAGAGACCGGTTCTCTCGGCTTGGATAGTGCGAAGGTTAATCTCATAATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGCAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGTCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTAAAATTGTCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAATTGATTGCAGTCCACCGCTGTCTGCAACATACTCAGCCATCTCTCTTCCATGCGATCCGTCACCATCATTGCTCTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 624 0.4696 MAITGEIFRQNLTELLEESPSGSPELHVLAVDDSLVDRHVIERLLKVSSCKVTVVESGTRALQYLGLDGETGSLGLDSAKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSIDCSPPLSATYSAISLPCDPSPSLLSPLSSKKARL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01149 207 CDD REC_typeA_ARR 28 150 - -
Vian1g01149 207 Gene3D - 26 176 - -
Vian1g01149 207 SMART REC_2 26 151 IPR001789 GO:0000160
Vian1g01149 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 159 IPR045279 GO:0009736
Vian1g01149 207 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Vian1g01149 207 SUPERFAMILY CheY-like 25 152 IPR011006 -
Vian1g01149 207 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01149 Vian-Chr1 12345236 12346970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01149 5 158 Response Regulator Gene Family AT3G48100 71.338 3.27e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g01149 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01149 K14492 - gmx:100796843 310.071