Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01147 ATGCTCTTCTCTCCCTCGTCCTCCACTCCCATTTCCACGCTCATGGCTCTGCTCTTCCTCTTTCTCCTCCTCTTCCTCTCTCTTTCCTCTGCTTCTCAGCCTCGTAATCCCGAAGTGGAGGCTTTGATGAACATAAAAGCAGCTCTCAATGATCCTCACGGCGTCTTGAATAACTGGGATGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACTTGCTCTTCTGATGACCTTGTCATAGGCCTAGGTGCGCCTAGCCAATCTCTCTCTGGCACTTTCTCTCCGGCAATTGGAAATCTAACAAATCTTCGACAAATATTGCTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAGCGCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACAGATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGACCTGTCTTATAACAATCTCAGTGGACCATTACCTAAGTTCCCAGCCAGGTCATTCAATATTGTGGGCAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCAGCGACCCTCATACCCATTTCCTTCTCGCAAGTGTCATCAGAGGGAAAGCACAAATCCAAAAAGCTAGCTATAGCACTTGGGACCAGTCTTAGTTGTGCTTCTGTCATCCTCCTGCTTGTTGGGCTATTTTGGTATAGAAAGAAACGACAGCTCGGAGCCATCCTATATATCAGTGATTACAAGGAAGAAGGAGTTCTTAGCTTGGGAAATCTAAAGAATTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTTTATCGGGGGAAGTTTGGAGATGGCACGATGGTAGCGGTGAAAAGGCTGAAAGATGTAAATGGCAGTGCTGGCGAATCGCAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTGCTTCGCTTAATTGGCTATTGTGCTACTCCTAATGAAAAACTTTTGGTTTATCCTTATATGTCTAACGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACTAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTACACGAGCAATGTGATCCAAAGATAATACACAGAGACGTGAAGGCCGCCAATGTGCTTCTGGATGACTATTATGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCACGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCTGAGTACCTCTCGACCGGCCAATCATCTGAGAAAACAGATGTGTTTGGATTTGGCATTCTCTTGTTAGAGCTCATAACCGGAATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAGGTTGCAGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATATAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCTGATGTGGTTCGAATGCTAGAAGGTGACGGGCTTGCTGAGAAGTGGGCATCAGCACATAATTACGGTAATCACGACATGAACCCGAGCCACAGCAACAATAGTTCATCCCACCATACCTCTGCTTCGAAACATGATGATGTTCATGACCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1935 0.4594 MLFSPSSSTPISTLMALLFLFLLLFLSLSSASQPRNPEVEALMNIKAALNDPHGVLNNWDEYSVDACSWAMITCSSDDLVIGLGAPSQSLSGTFSPAIGNLTNLRQILLQNNNISGNIPPELGALPKLQTLDLSNNRFSGVIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLIPISFSQVSSEGKHKSKKLAIALGTSLSCASVILLLVGLFWYRKKRQLGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKFGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYYEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDIIEVGEMLQVALLCTQYLTAHRPKMSDVVRMLEGDGLAEKWASAHNYGNHDMNPSHSNNSSSHHTSASKHDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01147 644 ProSiteProfiles Protein kinase domain profile. 304 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01147 644 MobiDBLite consensus disorder prediction 589 644 - -
Vian1g01147 644 Gene3D Transferase(Phosphotransferase) domain 1 381 591 - -
Vian1g01147 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vian1g01147 644 SMART serkin_6 304 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01147 644 Gene3D Ribonuclease Inhibitor 35 217 IPR032675 -
Vian1g01147 644 MobiDBLite consensus disorder prediction 606 624 - -
Vian1g01147 644 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 583 - -
Vian1g01147 644 SUPERFAMILY L domain-like 35 204 - -
Vian1g01147 644 MobiDBLite consensus disorder prediction 589 605 - -
Vian1g01147 644 FunFam Putative LRR receptor-like serine/threonine-protein kinase 35 217 - -
Vian1g01147 644 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Vian1g01147 644 SUPERFAMILY Protein kinase-like (PK-like) 287 574 IPR011009 -
Vian1g01147 644 Gene3D Phosphorylase Kinase; domain 1 274 380 - -
Vian1g01147 644 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Vian1g01147 644 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vian1g01147 644 SMART LRR_typ_2 149 172 IPR003591 -
Vian1g01147 644 SMART LRR_typ_2 125 148 IPR003591 -
Vian1g01147 644 SMART LRR_typ_2 101 124 IPR003591 -
Vian1g01147 644 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vian1g01147 644 Pfam Protein kinase domain 305 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01147 644 FunFam Somatic embryogenesis receptor kinase 1 274 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01147 Vian-Chr1 12325254 12329661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01147 18 519 Receptor kinase-like Gene Family AT2G23950 75.896 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian1g01147 Pkinase 4.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01147 - - gmx:100797186 1099.73