Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01144 ATGGTGAAACCTTTTCCATGGCCAAAAGATCACACTCACAGCTTCGAACCCAGAAAAACAATGCGACCAACATTGCCAATAATCTTAATGCAACCAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGCTACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGTTGGCTGATGTTTTTAATGTGATTTACTTCCATGCGGTGTTCTCAATCTTGTGGGGGTTCTTCACATACGTAACCACCTCAGTTTACCTTGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCTGCACTAAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTATATTGGATCTCTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGACATCATCACAATGGACGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTCGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGCTACATCAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAGATTAGCATTAATCTCAGTGACATGAATAACAATTGCACCAGCAGCAACTTCACCCCAAACCCTGATCAAGAACAAGAGCAAGAACTAAGCTTCCTCCACAACCAGGATTCAGTGAATACTGTTGTAGAAGAAGCCACATCGGTGACACATCAGCCCCGTGCATCAGGTGCCACGTCAGCATTGGAGCTTCTGCTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGATGGAGTCTGAGTTGCCACAGTGTGCGTTTCCTGATCACATTCAAACGTACTTTGAGTATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCCAGAGTTGA 1206 0.4502 MVKPFPWPKDHTHSFEPRKTMRPTLPIILMQPTLSPPRSNEQGEVSPETPLLNAAPYTEESLGTDGLVATKLIYGTSIAGMKHRTKKDDKLADVFNVIYFHAVFSILWGFFTYVTTSVYLGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNNDQISINLSDMNNNCTSSNFTPNPDQEQEQELSFLHNQDSVNTVVEEATSVTHQPRASGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCAFPDHIQTYFEYEDSNRYEEVDDLMFKFNEFSSIVPFYHCDEFQS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01144 401 Pfam AP2 domain 185 236 IPR001471 GO:0003700|GO:0006355
Vian1g01144 401 SMART rav1_2 186 250 IPR001471 GO:0003700|GO:0006355
Vian1g01144 401 SMART rav1_2 108 156 IPR001471 GO:0003700|GO:0006355
Vian1g01144 401 MobiDBLite consensus disorder prediction 33 47 - -
Vian1g01144 401 MobiDBLite consensus disorder prediction 32 54 - -
Vian1g01144 401 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700|GO:0006355
Vian1g01144 401 Gene3D AP2/ERF domain 80 152 IPR036955 GO:0003700|GO:0006355
Vian1g01144 401 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 313 - -
Vian1g01144 401 CDD AP2 185 246 IPR001471 GO:0003700|GO:0006355
Vian1g01144 401 SUPERFAMILY DNA-binding domain 115 152 IPR016177 GO:0003677
Vian1g01144 401 ProSiteProfiles AP2/ERF domain profile. 77 150 IPR001471 GO:0003700|GO:0006355
Vian1g01144 401 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700|GO:0006355
Vian1g01144 401 FunFam AP2-like ethylene-responsive transcription factor 185 246 - -
Vian1g01144 401 SUPERFAMILY DNA-binding domain 185 246 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01144 Vian-Chr1 12292061 12294479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01144 108 266 AP2-EREBP Transcription Factor Family AT3G54320 68.786 5.76e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g01144 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01144 K09285 - gmx:100793339 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01144 1 12292061 12294479 Vian1g01144 1 12292061 12294479 ECH