Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01134 ATGATGGGTTTGTTTAGGTTAGCAGTGTTCCTGTTTTTCTGTCTGGACACTGTTCATTCTACAGTTCTTGGGAAAGAAAATGCTGGCATCGTGAATGGAAAAAAATCACTTATTTCATTCATGTCAGGCATTGTTTCAGACCCTCAAAACGCTCTGGATAGTTGGAAGTCACCCGGTGTTCATGTTTGTGATTGGTCGGGTGTGAGATGTAACAATGCAAGTGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTAGGAGGCACTATTTCCCCTGCCCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCGGATTCCAAAAGAAATAGGCCATTTGGTTCGGCTTAGACAACTCAGTTTGTCTGGGAATTTTCTTGAGGATCACATTCCATCCGAGTTTGGTTTACTTCACAACTTGGACTACCTTAACTTAGGAAGCAATCATCTTGAGGGAGAGATCCCTTCTTCACTCTTCTGCAATAGGACTTCACTGGGTTATGTAGACCTCTCTAACAATTCCTTAGGTGGCCAAATCCCCTTGAACAAAGGGTGCATCCTAAAAGAACTCAAGTTCCTATTACTTTGGTCTAACAAGCTTGTAGGAAAAGTTCCTTTAGCTCTTTCAAACTCTACCAAGCTAAAATGGCTTGATTTGGGGTTGAATATGTTGAGTGGAGAGCTTCCTTCTGAGATTGTAAGTAATTGGCCACAACTACAATTCCTCTACTTGTCGTACAATAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCGCACTTTCAAGAACTTGAATTGGCGGGAAATAATCTCGGTGGAAAGCTGCCTCACAGTATTGGTGATCTTCCTACCAGCCTGCAACAACTCCACCTAGAAAAGAATCTCATATATGGCTCTATACCTCCTCATATTTCCAACCTTGTCAACCTGAATTTCTTGAAGTTGTCTAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCGGCCATATGAATAGGCTAGAAAGAATTTACTTATCAAACAATTCACTATCTGGTGAGATTCCTTCAACCCTTGGTGGCATTCAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGCCCAATACCAGACAGTTTTGCAAATTTACCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAACTTTCTGGAACAATCCCACCAAGTCTGGCAAAATGTGTAAATTTGGAGATTTTAGACTTATCTCACAACAATATAACTGGGTTGATTCCTGCAGAAGTTGCAGCCTTGAGTAGCTTGAAACTATACCTGAATTTATCAAACAATAACTTGCATGGGTCTATTCCATTAAAGCTCAGCAAAATGGACATGGTTCTAGCTATTGATTTATCCATGAATAACCTCTCTGGAAGCATACCACCACAGCTGGAAAGTTGCATAGCACTGGAGTACCTCAACCTCTCTGGTAACTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTTTATATTAGAGCACTTGATGTGTCTTCAAATCAGTTGACTGGGGCAATACCACAGTCCATGCAGTTGTCTCCCTCTCTGAAGGAACTTAATTTCTCTTTCAACAGATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAATCTTACCATAGACTCTTTCCTGGGAAACGGTGGTCTCTGCGGCCCGTTCAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCTGTGTCACTATTTGGCACCCCTCTCCTATGCATACTTTTTAGGTACCCAACAGTAATGAAGTCAAGAGTGAAAAAACGATTTGCAACTGTTAGCAGAGGTGATTTTGAGGATGTAGAAGAAGGAGCAAAAGAGGTCAAGTATCCAAGAATCACATATGAACAACTTAAAGAAGCCACCGGAGGCTTCGGTGCTACAAGCTTAATTGGTTCAGGCCGGTTTGGGCAGGTCTACGAAGGAATGCTCCAAGATAATACAAGAGTAGCTGTGAAGGTGTTGGACACAACACAAGGTGAGATTTCAAGGAGTTTTAGAAGGGAATGTCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATCTGTTGTAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATGGTAGTCTCGAGAGTCACCTATATCCAAGCCAAAGACTGAATGTGGTTCAACTAGTAAGAATCTGCAGTGATGTAGCTGAGGGAATGGCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCTAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTCACTGATTTTGGAATTTCAAGGCTTGTACAAAGTGATGAGAACACATCCACCAGCACCTCATCTTTCAGTTCAACACATGCTTTGCTATGTGGGACGGTCGGTTACATAGCTCCCGAGTACGGAATGGGAAAAGATGCTTCAAGTGAGGGTGATGTTTACAGTTTTGGGGTGCTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGAAGTGCTCAGCCATGAAGGCTCAAGCTTGAGTGAATGGCTTAAGAAACTATACACACAACCACACCACCTTCAAAGCTTTGTTCAACAAACACTTCAAAGGTGCTATCCTTTTGGTCTGCCAAATCCTCACAACAAAGTGTGGAAAGATGTTATTCTGGAACTCATTGAGCTGGGGCTCATTTGCACTCAGCACAACCCTTCAACAAGACCAAGCATGCACGACATAGCACAAGAGATGGAGAGGTTAAAGGACTACCTCACCAAGTCGACCTTCACACGTCATTCAAGTCAATCCCAACATTAA 2925 0.4205 MMGLFRLAVFLFFCLDTVHSTVLGKENAGIVNGKKSLISFMSGIVSDPQNALDSWKSPGVHVCDWSGVRCNNASDMIVEVDLSGRSLGGTISPALANISSLQILDLSGNFLVGRIPKEIGHLVRLRQLSLSGNFLEDHIPSEFGLLHNLDYLNLGSNHLEGEIPSSLFCNRTSLGYVDLSNNSLGGQIPLNKGCILKELKFLLLWSNKLVGKVPLALSNSTKLKWLDLGLNMLSGELPSEIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHSIGDLPTSLQQLHLEKNLIYGSIPPHISNLVNLNFLKLSSNLINGSIPPSLGHMNRLERIYLSNNSLSGEIPSTLGGIQHLGLLDLSRNKLSGPIPDSFANLPQLRRLLLYDNQLSGTIPPSLAKCVNLEILDLSHNNITGLIPAEVAALSSLKLYLNLSNNNLHGSIPLKLSKMDMVLAIDLSMNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLTGAIPQSMQLSPSLKELNFSFNRFSGKVSNKGAFSNLTIDSFLGNGGLCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPLLCILFRYPTVMKSRVKKRFATVSRGDFEDVEEGAKEVKYPRITYEQLKEATGGFGATSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTQGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLESHLYPSQRLNVVQLVRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLVQSDENTSTSTSSFSSTHALLCGTVGYIAPEYGMGKDASSEGDVYSFGVLVLEMVSGRRPTEVLSHEGSSLSEWLKKLYTQPHHLQSFVQQTLQRCYPFGLPNPHNKVWKDVILELIELGLICTQHNPSTRPSMHDIAQEMERLKDYLTKSTFTRHSSQSQH 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01134 974 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 367 - -
Vian1g01134 974 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vian1g01134 974 SMART LRR_typ_2 446 471 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 398 422 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 98 121 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 326 350 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 277 301 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 146 170 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 122 145 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 374 397 IPR003591 -
Vian1g01134 974 SMART LRR_typ_2 423 445 IPR003591 -
Vian1g01134 974 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Vian1g01134 974 SUPERFAMILY L domain-like 332 582 - -
Vian1g01134 974 SUPERFAMILY L domain-like 270 363 - -
Vian1g01134 974 SMART serkin_6 666 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01134 974 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Vian1g01134 974 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Vian1g01134 974 ProSiteProfiles Protein kinase domain profile. 666 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01134 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 377 594 - -
Vian1g01134 974 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 966 - -
Vian1g01134 974 Gene3D Ribonuclease Inhibitor 196 593 IPR032675 -
Vian1g01134 974 Gene3D Transferase(Phosphotransferase) domain 1 742 972 - -
Vian1g01134 974 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Vian1g01134 974 Pfam Leucine Rich Repeat 424 442 IPR001611 GO:0005515
Vian1g01134 974 Pfam Leucine Rich Repeat 498 517 IPR001611 GO:0005515
Vian1g01134 974 CDD STKc_IRAK 672 956 - -
Vian1g01134 974 PANTHER RECEPTOR-LIKE PROTEIN 55 313 956 - -
Vian1g01134 974 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 31 189 - -
Vian1g01134 974 SUPERFAMILY L domain-like 42 261 - -
Vian1g01134 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Vian1g01134 974 Pfam Protein kinase domain 670 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01134 974 Gene3D Ribonuclease Inhibitor 32 195 IPR032675 -
Vian1g01134 974 SUPERFAMILY Protein kinase-like (PK-like) 648 953 IPR011009 -
Vian1g01134 974 Gene3D Phosphorylase Kinase; domain 1 645 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01134 Vian-Chr1 12194540 12197583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01134 34 966 Receptor kinase-like Gene Family AT3G47570 33.657 1.10e-156 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vian1g01134 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01134 - - gmx:100792446 1655.19