Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01130 ATGGCTGGCATCACCACCGTCCCCTTCAAACTCTTTCATTACCACGCCACACCTTCTCCTCTCTTCACTTCTTCTCATTCCAAACTCTTCGGCCTTTCCCTCTCTAATCCCAATTCCCTCAAATACGATCCTTCTCTCTCCACCTCTCTCTTCTACGTAACCGCTCGCTACGGCGGCGGCGGCGGCGGCTCTCGCTCCTTCGGCTCCGGCGACTCCAGGAGACGCCAGCCCGAAACCGACGACGACCAGGCTCTCGACCTCTCCACCCTCAGGTCAGATACCGTGAGGCTTATTGATCAGAACCAGAATATGGTTGGAGTAATGTCAATTGATGACGCCATTCAAATGGCTGAGGATGTCGAACTTGATTTGGTAATATTATCCCCAGATGCAGATCCTCCTGTTGTTAGAATAATGAATTACAGCAAATATCGATATGAACAACAGAAGAAGAAAAGAGGACAGCAGAAGAAAAGTGCTGCTAATCGGATGGATTTGAAGGAGCTCAAAATGGGCAAAATCCATGAAATTTTAAAGCTCGTCATTACATCTTCAACTCTATTTATTTCCTCTCTTGATTCTCCAACTAGAGCTATGACAGGCATTATGGCATCAAATCTTTCAATATGCTCAAAACGCATTCAAGAGTTTTTTCTTCTTCTTTCTATTCAATTGTCACCACTTGATCCTGTCTTGGCTTTTCCTTCTTACTCTCTTCTCATCTCTTATGGCTGTGATCCAGATTCAATGTTGGTTACAGCTGTTGCCTTTCATGAGCTGTGTTACAACATAGATGAGCATGATTATTCAGTGCGTTTGAGAGCTGCACGGAAATTTTTGAAAGACGGTGACAAGGTTAAGGTCATAGTAAACCTTAAGGGTCGTGAAAATGAATTCAGGAATATTGCTATTGAGCTTCTTACACGTTTTCAGAATGATGTTGGGGAGGTTGGACTAGAGGAGGCAAAAAACTTCCGTGACAGAAACATCTTCATAATTTTGGTTCCAAACAAAGCTGCTGTACAGAAAACTCAAGAACCACCAAAGAAAAAAGACAAGTCCAACAAAGATGAAGTCTCCGCCAGTGTCCAAGCACTGTTGTCCCATTCACCAGTCACCACCACCAACATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATAGGAACGAACTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATATGCGGCGATGATGTGGGAGTGACGGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGCATGCCGACCGTGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTTAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAGCACGAATTCAACATCGATGACCAAATGAACAAGCATAATCACTCTGCCGAGGCCATGCTGCATGGCAAGATGAGCTACGGAAGAGGTCCAGAAGATGAGGAGAATTCTCAATTCCCAGCTGTTATTGCCGGTGGTCGTTCTCGCCCTGTTAGTGGAGAGTTGCCACTATCATCTCATTATGGGGAGCACCCTTCACTGCATAATCGTGTGCACCCTTATCCGGCATCTGATCCTAGAAATGGAAGATGGGATGAAACCAAAGATGATAGAACGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATACAGAATGGTGATTGTTGCACGGCTTGTTATCCTTGCCTTCTTCCTCCGATATAGACTGATGAATCCTGTACATGATGCATTGGGGCTGTGGTTAACATCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAGTAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTCAGTACTGTGGATCCCATGAAGGAACCTCCACTGGTTACGGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACTTTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGAGCACCAGAGATGTACTTCTGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGGTCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCACAGGGAGGATGGATCATGCAGGATGGAACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGACACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACGAATGCTCCTTTCATGCTGAATTTGGATTGCGATCATTATGTCAATAACAGCAAAGCTGCTAGAGAGGCCATGTGTTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACTGGGTGTGTATTTAGGAGACAAGCTTTATACGGTTATAATCCTCCCAAGGGTGCCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGGTGTAGATGGAGAGGCTGCAACCCTAAGAGGACCAGATGATGATAAAGAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGCCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCACGTGATCAGCTGCGGATACGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCTAAGCGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCTGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGCTATAAGGAAGGGAAGTTGAAGTGGCTTGAGCGATTTGCATATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTCGCCTACTGTGTCCTTCCTGCTGTCTGTTTGCTCACCGATAAATTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGTGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACCAATTTCACTGTTACATCAAAGGCAGCGGATGATGAAGAATTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTTGGCGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGATACCAATCCTGGGGACCTCTATTTGGAAAACTGTTCTTCTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCGATACTATTGGCTTCCATTTTCTCCTTGCTTTGGAGGGCATCTTTTGAAGATGAATGTAAATTCTTTGTTGTGCTGCGAGGAGGGAAAGGAAGGAGAGCTTCCCCCTTGTTTGGTTTGGTTGAAGACAGGGGAGTCTCCTCGGCAAGGGAGGAGAGAGAAAACAATTGTACCATGTTGTGCCTTTATAAGAATTATTGGAAAGGAGAGGACAAACCTCATGAATAA 4347 0.4497 MAGITTVPFKLFHYHATPSPLFTSSHSKLFGLSLSNPNSLKYDPSLSTSLFYVTARYGGGGGGSRSFGSGDSRRRQPETDDDQALDLSTLRSDTVRLIDQNQNMVGVMSIDDAIQMAEDVELDLVILSPDADPPVVRIMNYSKYRYEQQKKKRGQQKKSAANRMDLKELKMGKIHEILKLVITSSTLFISSLDSPTRAMTGIMASNLSICSKRIQEFFLLLSIQLSPLDPVLAFPSYSLLISYGCDPDSMLVTAVAFHELCYNIDEHDYSVRLRAARKFLKDGDKVKVIVNLKGRENEFRNIAIELLTRFQNDVGEVGLEEAKNFRDRNIFIILVPNKAAVQKTQEPPKKKDKSNKDEVSASVQALLSHSPVTTTNMEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGPEDEENSQFPAVIAGGRSRPVSGELPLSSHYGEHPSLHNRVHPYPASDPRNGRWDETKDDRTDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSVRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGAKRPKMISCDCCPCFGKRKKVKYEGNGVDGEAATLRGPDDDKEMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWRASFEDECKFFVVLRGGKGRRASPLFGLVEDRGVSSAREERENNCTMLCLYKNYWKGEDKPHE 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01130 1448 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 845 990 IPR029044 -
Vian1g01130 1448 FunFam Cellulose synthase 816 990 - -
Vian1g01130 1448 Gene3D - 259 346 IPR036788 GO:0006413
Vian1g01130 1448 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 602 1374 - -
Vian1g01130 1448 SUPERFAMILY RING/U-box 397 485 - -
Vian1g01130 1448 Pfam Translation initiation factor IF-3, C-terminal domain 261 337 IPR019815 GO:0006413
Vian1g01130 1448 Pfam Cellulose synthase 699 1386 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vian1g01130 1448 Gene3D - 88 157 IPR036787 GO:0003743|GO:0006413
Vian1g01130 1448 MobiDBLite consensus disorder prediction 63 84 - -
Vian1g01130 1448 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 90 157 IPR036787 GO:0003743|GO:0006413
Vian1g01130 1448 CDD mRING-HC-C4C4_CesA 411 461 - -
Vian1g01130 1448 MobiDBLite consensus disorder prediction 562 579 - -
Vian1g01130 1448 FunFam Translation initiation factor IF-3 254 345 - -
Vian1g01130 1448 ProSitePatterns Initiation factor 3 signature. 137 150 IPR019813 GO:0003743|GO:0006413
Vian1g01130 1448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 485 IPR013083 -
Vian1g01130 1448 FunFam Cellulose synthase 395 486 - -
Vian1g01130 1448 Coils Coil 797 817 - -
Vian1g01130 1448 MobiDBLite consensus disorder prediction 527 595 - -
Vian1g01130 1448 FunFam Translation initiation factor IF-3 88 153 - -
Vian1g01130 1448 Pfam Translation initiation factor IF-3, N-terminal domain 91 153 IPR019814 GO:0003743|GO:0006413
Vian1g01130 1448 Pfam Zinc-binding RING-finger 403 480 IPR027934 -
Vian1g01130 1448 ProSiteProfiles Zinc finger RING-type profile. 413 459 IPR001841 -
Vian1g01130 1448 SUPERFAMILY Nucleotide-diphospho-sugar transferases 712 1168 IPR029044 -
Vian1g01130 1448 NCBIfam translation initiation factor IF-3 91 171 IPR001288 GO:0003743|GO:0006413
Vian1g01130 1448 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 260 338 IPR036788 GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01130 Vian-Chr1 12138410 12152612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01130 377 1385 Cell Wall Biosynthesis AT5G17420 85.672 0.0 1805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01130 K10999 - gmx:100779834 2017.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01130 1 12138410 12152612 Vian1g01130 1 12138410 12152612 ECH