Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01125 ATGGAATTCAGGTTTCGTCATGGCGAAAACCAAAGCACACTGTTACCGCAGCAGCGCACTCTCGCTCTCTCCACTGTCCCTTTGGTCTCCGGTCACCCATTACGAGGTGGTTTTTCGGGTATTATCCGGGAGACGAAAATGTACCCAACTTCGGTACCGATCAACCCGGAGGAAGTAATACGGCGAGAGATGGAAAGGGAGCAGATAAGGCGAGAGATGGAGAAAGAGGAAATAAGGAGAGAGATTCTCGCCGGGGAGATGGCACGGCGGATGGAATTGGAAGAGGAGGTGAGGAGGGAACTGATGTCGGAAAGAGCACTGAAAATGCAGATACACAGAATGGAAGGAATCACTTGTGGTGAACGAGTTTCGCTGTCTATGATCCCAGGAAGGAGACTGCAAAACTTTGTTCATAACAGCAACATATTTGGTGGACCACAACCCCAGTTAGCTCATAAAGTTGACATCACACAGTTCTATAAGCAGAAGCCAAATGAAACTCTGACTAATAATCAGCCAAATGTTGTTCTTTCTGGTGCAAAGTGCAAAGAGGTGCTACACAGAGAGGTGCTAGATGTTAATCTTGTGAAGCGAAAACTGGAGGCTTCTTTTCGGGTTGATGACAAACATTCTGGATCTAGCTTGGAGAAGAAACCCAAGAATGATTGGAGATGTGCATTATGTCATATTGTTACCACAAGTGAAAAAGGCTTGAATGATCATCTGCAAGGGAAAAAGCACAAGATTAAAGAAGCATCTAGAACTCCAAAAATAGGATTGGTTGCAAGACGACAGGATGGTGAAACACTTCAATCTGGCATGAAGCCTGCATACAAAGGCAAACTGGAACCCGTAAAAATGGATTTGGTTGTGGAGAAAACTCAAGATTTAGGTGGCACAGATAATGAAAATGAAACCACCACTGAGGAAAAAGTTCTGAAAACCAAAGCAATGACTACAAGGAAGAAGTTTAGTTTTTATTGTGCATTTTGTCAAGTTCGAACTCACTCAGAAATTATCATGCAGAGTCATAAAAGTGGAAAAAAACATCTGGCTAATATTAAAAAATATAGCCCAAACAATTCTGCTGGTGCTGTTTGTGCTGCTGGAAATTCCGAGTAA 1122 0.4305 MEFRFRHGENQSTLLPQQRTLALSTVPLVSGHPLRGGFSGIIRETKMYPTSVPINPEEVIRREMEREQIRREMEKEEIRREILAGEMARRMELEEEVRRELMSERALKMQIHRMEGITCGERVSLSMIPGRRLQNFVHNSNIFGGPQPQLAHKVDITQFYKQKPNETLTNNQPNVVLSGAKCKEVLHREVLDVNLVKRKLEASFRVDDKHSGSSLEKKPKNDWRCALCHIVTTSEKGLNDHLQGKKHKIKEASRTPKIGLVARRQDGETLQSGMKPAYKGKLEPVKMDLVVEKTQDLGGTDNENETTTEEKVLKTKAMTTRKKFSFYCAFCQVRTHSEIIMQSHKSGKKHLANIKKYSPNNSAGAVCAAGNSE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01125 373 Coils Coil 61 86 - -
Vian1g01125 373 SMART c2h2final6 326 350 IPR013087 -
Vian1g01125 373 SMART c2h2final6 223 247 IPR013087 -
Vian1g01125 373 Gene3D Classic Zinc Finger 205 253 - -
Vian1g01125 373 Gene3D Classic Zinc Finger 304 357 - -
Vian1g01125 373 SUPERFAMILY beta-beta-alpha zinc fingers 206 253 IPR036236 -
Vian1g01125 373 Pfam Zinc-finger of C2H2 type 223 247 - -
Vian1g01125 373 Pfam Zinc-finger of C2H2 type 326 350 - -
Vian1g01125 373 SUPERFAMILY beta-beta-alpha zinc fingers 323 357 IPR036236 -
Vian1g01125 373 SMART ZnF_U1_5 323 357 IPR003604 GO:0003676|GO:0008270
Vian1g01125 373 SMART ZnF_U1_5 220 254 IPR003604 GO:0003676|GO:0008270
Vian1g01125 373 PANTHER OS06G0651300 PROTEIN-RELATED 33 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01125 Vian-Chr1 12091889 12094404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01125 225 356 C2H2 Transcription Factor Family AT5G61190 27.465 6.90e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01125 - - var:108336528 670.233