Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01123 ATGATGGCATTCCAAAGGAAGGTTCATGCCTTCTTCCTGTGCTTATTATCAATCTTTGTATTTTCTTCCCTTGTTGCTGCTGCTGCTGTGCCAAAACAGCAAGAACAAGATCGGATCTCAGCACTTCCAGGGCAGCCACGTGTGGCATTCTCTCAGTTCTCAGGTTATGTCACTGTGAACGAGCAACATGGTCGAGCACTCTTCTACTGGCTCACTGAATCTCCCTCTTCTCCTCAGAATAAGCCTCTTGTTCTGTGGCTCAATGGAGGGCCTGGATGCTCATCGGTAGCATACGGTGCATCAGAGGAAATTGGGCCATTCCGTGTAAACAAAACTGGATCTTCTCTATATCTCAACCCAGATGCATGGAACAGAGAAGCAAATATTCTTTTTCTCGAATCGCCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCTGATCTCAAAACTTCAGGGGACAAAAGAACAGCTCAGGATGCACTGATTTTCCTAATCAGATGGATGTCAAGGTTTCCACAGTATAAATATAGGGAGTTTTACATTGCTGGGGAGAGCTATGCAGGGCACTACGTCCCCCAGTTGGCTAAGACAATCCATGACTATAATAAAAAGAATCCCCAAATTATTAATCTCAAAGGGTTCATCGTGGGAAATGCTGTGACTGATAGCTACAATGATGGGATTGGAACCATCACATATTGGTGGAGCCATTCTATGATATCCGATCAGTCCTACAAATCCATCCTCAAGTACTGCAATTTCACTTCAGAAGAAACATCTAAAAAATGTGATGATGCTTATAGTTATGCAGTTAACTATGAATTTGGAAAAATAGATCAGTACAGCATCTATACCCCAACGTGCCCAACATCACAGAACAATACTGTCAAACACATACGATTCAAGAATCTTCATATGATTTCAGGATATGATCCGTGCACTGAAAATTATGCAGAGAAATACTATAACCTTCCGGAAGTGCAGAAAGCAATGCATGCAAATGTTACCGACATTCCTTACAAATGGACTGCTTGCAGTGAAGTGCTCCTAAAGAATTGGAAGGATTCTGAAATTTCTGTGCTGCCTATATACAAAGAGTTAACTGGTGCAGGATTGAAAATATGGGTATTCAGCGGGGACACAGATTCTGTGGTTCCAGTGACTGCCACGAGGTTTTCTCTGAACCACCTTAACCTAAGCATCAAAACTCGTTGGTATCCATGGTACTCTGGTGGACAGGTTGGTGGATGGACAGAGGTGTATAATGGTCTAACATTTGCAACAGTAAGAGGAGCTGGCCATGAAGTTCCTTTGTTTCAGCCAAAACGAGCTTACACTCTTTTTAAGTCCTTTTTGGCAGGAAAAGAACTACCAAAACATTGA 1386 0.4257 MMAFQRKVHAFFLCLLSIFVFSSLVAAAAVPKQQEQDRISALPGQPRVAFSQFSGYVTVNEQHGRALFYWLTESPSSPQNKPLVLWLNGGPGCSSVAYGASEEIGPFRVNKTGSSLYLNPDAWNREANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKTIHDYNKKNPQIINLKGFIVGNAVTDSYNDGIGTITYWWSHSMISDQSYKSILKYCNFTSEETSKKCDDAYSYAVNYEFGKIDQYSIYTPTCPTSQNNTVKHIRFKNLHMISGYDPCTENYAEKYYNLPEVQKAMHANVTDIPYKWTACSEVLLKNWKDSEISVLPIYKELTGAGLKIWVFSGDTDSVVPVTATRFSLNHLNLSIKTRWYPWYSGGQVGGWTEVYNGLTFATVRGAGHEVPLFQPKRAYTLFKSFLAGKELPKH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01123 461 Gene3D alpha/beta hydrolase 33 291 IPR029058 -
Vian1g01123 461 SUPERFAMILY alpha/beta-Hydrolases 34 458 IPR029058 -
Vian1g01123 461 Pfam Serine carboxypeptidase 44 454 IPR001563 GO:0004185|GO:0006508
Vian1g01123 461 Gene3D - 314 351 - -
Vian1g01123 461 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Vian1g01123 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 442 IPR001563 GO:0004185|GO:0006508
Vian1g01123 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Vian1g01123 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Vian1g01123 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Vian1g01123 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Vian1g01123 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Vian1g01123 461 Gene3D - 361 455 - -
Vian1g01123 461 FunFam Carboxypeptidase 361 455 - -
Vian1g01123 461 FunFam Carboxypeptidase 33 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01123 Vian-Chr1 12078313 12083632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01123 319 458 Calmodulin-binding Proteins AT2G22960 29.787 7.93e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01123 K16297 - gmx:100785391 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01123 1 12078313 12083632 Vian1g01123 1 12078313 12083632 ECH