Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01120 ATGATGTTTGACTGTGGTCGCAAGTCAGAATACATGGGTGGCCAGCGGGAAAACTTTTTGAGGTTGGAGGCCCTGGATTCTACACTATCTTCATCTTCTGATGCTGGAGTTATAAAATCTGGATTTAGTATTGATAAATTAGGCCATGGTGGTCATGGAAGCAGCACGACTTCAAGGTCTTTTAAAAGGGACCGAAAATTGGCAACAATAGTTACAACATTAAGGACAGTGATTGATGCTTTCTATCTTATGCACATGGCACTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCGGCACAGATAGCCAAACGATACTTGCAGCGGTATTTCATCATTGATTTCCTATCAGTGTTGCCTATACCACAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATGTTATTTGCTGCTGTACATGCTTGCCAGTCATACATATCTTCAGTCTCTCACAATTAGGCTCGAAGAAATGAGAGTTAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGTTTACTCCCACAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATCTGTGAGAGACTGAAACCATGTTTATTTACAGAGCATACTTACATCGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAGGAAGCGGACTTCTGTGGGGAGGAGCTATTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCCACTAGAACAGTTAAAGCATTAATGGAGGTTGAGGCTTTTGCCTTAACAGCCGATGAGTTAAAATTTGTTGCCAGTCAATTTAGACGCCTTCACAGCAGACAGGTTCAACACACTTTCCGATTTTACTCCCAGCAGTGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAACTCATGAAGCTTCGTCAAAAGGAAGAAGATGCTGATGAATCAGAGGGAAGTCACGAAACTGGTGGTGGTAATTCCTACAGCTTTGGTGCTGCCCTGTTAGCCTCTAAGTTTGCTGCGCACACTCTTCGTGGCGTTCATCGTAATCGACTTGCTAAGACTGCCAGGGAGTTGGTGAAACTACAGAAACCCCCAGAGCCTGATTTCTCTGCAGATGACGCTGACTAA 1464 0.4467 MMFDCGRKSEYMGGQRENFLRLEALDSTLSSSSDAGVIKSGFSIDKLGHGGHGSSTTSRSFKRDRKLATIVTTLRTVIDAFYLMHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLQRYFIIDFLSVLPIPQYVPRFLRMVPLTSELKRTAGVFAETAWAGAACYLLLYMLASHTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEHTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKLMKLRQKEEDADESEGSHETGGGNSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01120 487 SMART cnmp_10 259 390 IPR000595 -
Vian1g01120 487 FunFam Cyclic nucleotide-gated ion channel 1 257 375 - -
Vian1g01120 487 CDD CAP_ED 259 390 IPR000595 -
Vian1g01120 487 ProSiteProfiles cAMP/cGMP binding motif profile. 259 343 IPR000595 -
Vian1g01120 487 Pfam Cyclic nucleotide-binding domain 280 370 IPR000595 -
Vian1g01120 487 Pfam Ion transport protein 65 178 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian1g01120 487 ProSiteProfiles IQ motif profile. 395 424 IPR000048 GO:0005515
Vian1g01120 487 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 61 135 - -
Vian1g01120 487 MobiDBLite consensus disorder prediction 468 487 - -
Vian1g01120 487 SUPERFAMILY Voltage-gated potassium channels 64 178 - -
Vian1g01120 487 Gene3D Helix hairpin bin 187 250 - -
Vian1g01120 487 FunFam Cyclic nucleotide-gated ion channel 1 186 250 - -
Vian1g01120 487 Gene3D Jelly Rolls 257 377 IPR014710 -
Vian1g01120 487 SUPERFAMILY cAMP-binding domain-like 188 379 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01120 Vian-Chr1 12049488 12056214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01120 2 63 Ion Channels AT2G23980 43.662 2.40e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01120 K05391 - gmx:100784327 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01120 1 12049488 12056214 Vian1g01120 1 12049488 12056214 ECH