Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01114 ATGAAGGAGAAAAAGAGAGAAAAAGAGAGAAGGGTGAATATGTCTGACGAAGAGCATCACTTCGATTCTCACGCAGATGCAGGAGCGTCCAAGACGTATCCTCAGCAGGCTGGTACCATTCGCAAGAACGGTTACATCGTCATTAAATCTAGGCCTTGCAAGGTCGTAGAAGTTTCTACATCAAAGACAGGCAAGCATGGACATGCAAAATGCCACTTTGTTGCCATTGATATTTTTAACGGGAAAAAGCTTGAAGATATCGTTCCATCTTCCCACAACTGTGATGTTCCACACGTGAACCGCACTGACTATCAGCTGATTGATATATCTGAAGATGGCTTTGTGAGTCTGTTGACTGATAACGGAAATACCAAGGATGATCTTAGGCTTCCCACTGATGACTCGCTGCTTTCTCAGATTAAAGAAGGTTTTGCTGAAGGAAAAGATCTTGTGGTTTCTGTCATGTCTGCTATGGGAGAAGAGCAGATCTGTGCCTTGAAGGACATCGGTCCCAAAAATTAA 522 0.4349 MKEKKREKERRVNMSDEEHHFDSHADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01114 173 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 98 167 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian1g01114 173 Gene3D - 14 98 IPR014722 -
Vian1g01114 173 FunFam Eukaryotic translation initiation factor 5A 99 171 - -
Vian1g01114 173 Gene3D - 99 172 IPR012340 -
Vian1g01114 173 SUPERFAMILY Nucleic acid-binding proteins 99 169 IPR012340 -
Vian1g01114 173 CDD S1_eIF5A 99 169 - -
Vian1g01114 173 PIRSF Transl_init_eIF5A 14 170 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian1g01114 173 FunFam Eukaryotic translation initiation factor 5A 14 98 - -
Vian1g01114 173 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g01114 173 SMART eIF_5a_2 98 167 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian1g01114 173 SUPERFAMILY Translation proteins SH3-like domain 28 106 IPR008991 -
Vian1g01114 173 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 63 70 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian1g01114 173 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 14 170 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian1g01114 173 NCBIfam translation initiation factor IF-5A 30 166 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian1g01114 173 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01114 Vian-Chr1 11989331 11992165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01114 14 172 Eukaryotic Initiation Factors Gene Family AT1G13950 89.937 1.21e-104 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01114 K03263 - egr:104436092 317.39