Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01113 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTTTTGTTCAAGCATTTGGAATCTCAGCAACCAAATACTGATGAGTTTTTTGTATCTGCGTTCTTGAAGCATACGAGTTTAGCATCCTCACAAGCCTACAATTTCTCTGCTTCTGTCTGTTCATGGCAAGGGGTTTCTTGTGATGCCAATAGAGAACATGTTGTTGGCTTAGTCTTTTCTGGTATGAACCTCTCTGGCACTGTACCTGATAACACCATAGGCAAGCTAGGCAAACTTCAAACTCTAGATCTTAGCCACAACAATATCACTGGCTTGCCTTCAGATTTTTGGAGCTTAAGCTCCCTCAAGAACCTTAATCTCTCCTCGAATCATATTTCTGGTTCACTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAACTGTTTGCTCACTGCTGAGTCTAAGGGTCCTCAAACTCAACCACAACAGGTTTGCACACAACATACCTTATGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAAGACTTCCAGATGGTTTTGGTGCTTCTTTTCCCAAGCTTAGGATATTGAACCTTGCTGGGAATAATTTTAATGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGACATGTTTCAGGGAAGGTTGGAGGTTCTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTATACAACTTTAGTGGTTACAACTGGTCTCATTTAGTTTACCTAGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAAAATTTGAACGAGTCCTTGAATTTGAAACACATTAATCTTGCACACAATAGATTTACCATACAGAAATTTCCCCAAACTGAAATGCTCCTGAATTTGGAATATCTGAATTTGTCCAAAACCAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAAGCAATTTGAGTGCACTTGATCTTTCTTTGAATCATCTGAGTGGGAAAATTCCCTCACTGAGGAATGAACACCTCCGAGTCTTAGACCTCTCAAACAACAATTTAACAGGAGCAGTCCCTCAATCTGTCTTGGAGAAACTCCCTGGGATGGAGAAATACAACTTCTCTTATAATAACCTAACACTTTGTGCTTCTGAAATCAAACCCGAGATTCTGCAAACAGCATTCTTTGGATCATTGAACAGTTGTCCAATTGCTGCGAATCCACGACTCTTCAAAAGAAGAGACAATGGACACACGGGAATGAAGCTGGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTGGCTGGGCTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAGCAGTCTTCATACAAAGAAGAACAAAACATTTCAGGTCCCTTTTCATTCCAGACTGATTCAACAACTTGGGTGGCTGATGTTAAACAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAACATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGAGGCACCCTTTTGGCTGAGGGAAAATTTGGACCAGTCTATAGAGGATTTCTGCCTGGTGGTATTCACGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACCGGATATTGTGTGGCTGGGGACCAAAGAATTGCCATATACGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTACGACCTGCCACTTGGGGTACAAAGCACAGATGACTGGAGCACAGACACATGGGAAGAAACAGACAACAATGGAATTCAAAATGCTGGCTCTGAAGGGTTACTGACATCTTGGAGATTTCGCCACAAGATAGCCCTTGGCACCGCTCGAGCGTTGGCATTTCTGCATCACGGTTGCTCTCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGATTATGACTTGGAGCCGAGGTTGTCTGATTTTGGACTGGCCAAGATTTTCGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCGGAGTTTTCTCAACCAGAATATGACACCCCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGCTGTTTGAGCTAGTAACTGGAAAAAAGCCAGTTGGAGATGACTACCCTGATGATAAAGATGCAACTTTGGTGAGTTGGGTGAGAGGACTTGTGAAAAAGAACCAATCTTCAAATGCTATTGATCCAAAAATTCGTGACACAGGACCGGATGAACAAATGGAAGAGGCCCTTAAGATTGCTTATCTTTGCACTGCTGACCGTCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTGAAGGATATTGAACCTACTGCTGATTAG 2565 0.4238 MGLGVFGSVLVLVLLFKHLESQQPNTDEFFVSAFLKHTSLASSQAYNFSASVCSWQGVSCDANREHVVGLVFSGMNLSGTVPDNTIGKLGKLQTLDLSHNNITGLPSDFWSLSSLKNLNLSSNHISGSLTSNIGNFGLLESIDLSSNNFSEEIPETVCSLLSLRVLKLNHNRFAHNIPYGILKCQSLVSIDLSSNQLNGRLPDGFGASFPKLRILNLAGNNFNGRVSDISGLKSIANLNISGNSFQGSIVDMFQGRLEVLDISRNQFQGHIPQVLYNFSGYNWSHLVYLDLSENKLSGEFFQNLNESLNLKHINLAHNRFTIQKFPQTEMLLNLEYLNLSKTSLVGEIPGKISQLSNLSALDLSLNHLSGKIPSLRNEHLRVLDLSNNNLTGAVPQSVLEKLPGMEKYNFSYNNLTLCASEIKPEILQTAFFGSLNSCPIAANPRLFKRRDNGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEETDNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEYDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKDATLVSWVRGLVKKNQSSNAIDPKIRDTGPDEQMEEALKIAYLCTADRPFKRPSMQQIVGLLKDIEPTAD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01113 854 FunFam Nuclear pore complex protein NUP107 28 179 - -
Vian1g01113 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Vian1g01113 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 374 - -
Vian1g01113 854 Pfam Protein tyrosine and serine/threonine kinase 552 845 IPR001245 GO:0004672|GO:0006468
Vian1g01113 854 ProSiteProfiles Leucine-rich repeat profile. 379 400 IPR001611 GO:0005515
Vian1g01113 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 849 - -
Vian1g01113 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Vian1g01113 854 PRINTS Leucine-rich repeat signature 355 368 - -
Vian1g01113 854 PRINTS Leucine-rich repeat signature 92 105 - -
Vian1g01113 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Vian1g01113 854 Pfam Leucine Rich repeat 377 392 IPR001611 GO:0005515
Vian1g01113 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01113 854 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Vian1g01113 854 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Vian1g01113 854 Gene3D Ribonuclease Inhibitor 279 444 IPR032675 -
Vian1g01113 854 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
Vian1g01113 854 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Vian1g01113 854 SMART LRR_typ_2 160 184 IPR003591 -
Vian1g01113 854 SMART LRR_typ_2 378 401 IPR003591 -
Vian1g01113 854 SMART LRR_typ_2 89 111 IPR003591 -
Vian1g01113 854 SMART LRR_typ_2 112 136 IPR003591 -
Vian1g01113 854 SUPERFAMILY L domain-like 46 420 - -
Vian1g01113 854 SUPERFAMILY Protein kinase-like (PK-like) 534 846 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01113 Vian-Chr1 11982526 11985090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01113 70 849 Receptor kinase-like Gene Family AT5G07280 32.775 7.63e-115 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vian1g01113 PK_Tyr_Ser-Thr 1.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01113 - - gmx:100797738 1511.51