Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01109 ATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGTTGCCTTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACGCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACACCCCCAGTTACTGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTGGTACACCTAACAATATTTGTCAAGAGTCAGCCAGATCTTCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACAGCAAGCACCTCATCCTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTATTATGTTGTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCACCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCAACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTCCCCTTCACGACCTCCAACTCCGCCTCCTCCACCCACTCCTCCATTAAATGATTATAGACGAGTTCGAGCTACACCACCTCCTCCACCACCACCTCCTCCTATTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGGACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTCTCTCTGGGCAAGTTGCAGGTTTTACTATAGTACCACCTCCACCTCCACCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTATAGCTCCTTCCCCTCCTCCTGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGCACCTGCCCCTTCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACGCAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCGTTGCACGATTTAATGACCTCAGTACTAGCACTGGAAGATTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCAGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACACGGGCACGGGACAAAAAGTTGACTCTTATGCATTATCTTTGTAAGGTGCTAGTTGACAAACTGCCGGAAGTCCTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAATACAGGAACTCTCAACTGCTGAAAGTGATGGGCCTATATCAGAAACTTTCTGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCACTGGCTTCACTATATTCAACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTCGCGTCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAACTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGGATTTTACCTACACCTATCCCGACTGGCAATGTCAAATAG 2703 0.4584 MEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSTKTPPVTDMSRKEDNTNKFEGIPQQPGTPNNICQESARSSKRTSESNKCPTRPTNLDIKQQAPHPAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSYYVVPLQSKHQSQDRSHSSISIPTPDTQLSPTFHSKSLADTISCPSASTITSTQSSPSLSSKNVDEIPPIKTRIESSPSRPPTPPPPPTPPLNDYRRVRATPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDGPSPPLSLKEEQPTRFKPPCLSGQVAGFTIVPPPPPPPPPLSSEVLYSNCTNSSLQKSIAPSPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAPSSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNAKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLALEDSALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKLTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVIQELSTAESDGPISETFCKKLKEFLGSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEENCKQLELEMKKTENEKKKCESERILPTPIPTGNVK 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01109 900 SMART it6_source 243 900 IPR015425 -
Vian1g01109 900 MobiDBLite consensus disorder prediction 347 363 - -
Vian1g01109 900 Coils Coil 860 887 - -
Vian1g01109 900 PANTHER FORMIN-J 398 885 - -
Vian1g01109 900 MobiDBLite consensus disorder prediction 36 480 - -
Vian1g01109 900 MobiDBLite consensus disorder prediction 332 346 - -
Vian1g01109 900 MobiDBLite consensus disorder prediction 881 900 - -
Vian1g01109 900 SUPERFAMILY Formin homology 2 domain (FH2 domain) 561 887 - -
Vian1g01109 900 Coils Coil 766 790 - -
Vian1g01109 900 Pfam Formin Homology 2 Domain 490 859 IPR015425 -
Vian1g01109 900 MobiDBLite consensus disorder prediction 51 67 - -
Vian1g01109 900 Gene3D Formin, FH2 domain 485 870 IPR042201 -
Vian1g01109 900 ProSiteProfiles Formin homology-2 (FH2) domain profile. 486 885 IPR015425 -
Vian1g01109 900 MobiDBLite consensus disorder prediction 80 229 - -
Vian1g01109 900 MobiDBLite consensus disorder prediction 364 453 - -
Vian1g01109 900 MobiDBLite consensus disorder prediction 242 280 - -
Vian1g01109 900 MobiDBLite consensus disorder prediction 463 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01109 Vian-Chr1 11931515 11941901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01109 480 883 Protein tyrosine phosphatase (PTP) family AT5G58160 73.827 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01109 - - var:108329436 884.019