Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01107 ATGAGTGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGGTGTGGGCGAGGGACAATCGACGTTGCTTCACGGGAAGTACGAGCTGGGTAGGGTGTTGGGGCATGGAACGTTCGCGAAGGTGTACCACGCGCGGAATCTTAAGACGGGGCAGCACGTGGCCATGAAGGTGGTGGGGAAGGAGAAGGTGATAAAGGTTGGGATGATGGAGCAGGTAAAGAGGGAGATCTCGGTGATGAAAATGGTGAAACACTCCAACATCGTCGAACTCCACGAAGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAACTCGTGCGCGGCGGAGAGCTCTTCAACAAGGTATCCAAAGGTCGGTTGAAGGAGGACGTCGCCAGACTCTACTTCCAGCAGTTGATCTCCGCGGTCGACTTCTGCCACAGCCGCGGAGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACGAACACGGCAACCTCAAGGTCTCCGACTTCGGACTCACCGCCTTCTCCGACCACCTCAAGGAGGATGGGCTGCTGCACACCACGTGTGGCACGCCCGCGTACGTGTCGCCGGAGGTCATAGCGAAGAAAGGTTACGACGGTGCCAAGGCTGACATATGGTCGTGTGGGGTCATCCTCTACGTCCTCCTGGCAGGGTTTCTACCCTTTCAGGATGATAATTTGGTTGCCATGTATAAGAAAATTTACAGAGGAGACTTCAAGTGTCCACCTTGGTTTTCCGTGGAGGCGCGAAGGCTTGTTACCAGACTCCTCGACCCCAACCCGAATTCCCGGATTAGTATCAGTAAAGTCATGGAGTCTTCCTGGTTTAAGAAACCGGTGCCGAGGAAGGTGGAGGAGGTGGCGAAGGTGGATTTGGAGGAGATGTGTGAGAGGCCTGCCACCATGAACGCGTTTCACATAATATCGTTGTCGGAGGGGTTCGATTTGTCGCCCCTGTTTGAGGAGAAGAAGAGGGAGGAGATGAGGTTCGCGACGGCGGGGACGCCCAGCAGCGTGATATCGCGGCTGGAGGAGGTGGCGAAGGCGGGGAAGTTCGACGTGAAAAGTAGCGAGACGAAGGTAAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGAAAGCTGGCTATTGCGGCGGATATTTACGCCGTGACACCGTCCTTTATGGTGGTGGAAGTGAAGAAGGACAATGGAGATACCCTGGAGTACAACCAGTTCTGCAGCAAGCAGCTTCGTCCTGCGCTTAAAGACATCTTCTGGAATTCCCCACAGAATTCCACACCTGCAATAGTGCTTGAGTGA 1317 0.5482 MSEKEKEKEKEKEKGVGEGQSTLLHGKYELGRVLGHGTFAKVYHARNLKTGQHVAMKVVGKEKVIKVGMMEQVKREISVMKMVKHSNIVELHEVMASKSKIYIAMELVRGGELFNKVSKGRLKEDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLTAFSDHLKEDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSVEARRLVTRLLDPNPNSRISISKVMESSWFKKPVPRKVEEVAKVDLEEMCERPATMNAFHIISLSEGFDLSPLFEEKKREEMRFATAGTPSSVISRLEEVAKAGKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWNSPQNSTPAIVLE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01107 438 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01107 438 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01107 438 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Vian1g01107 438 CDD STKc_SnRK3 27 281 - -
Vian1g01107 438 FunFam Non-specific serine/threonine protein kinase 19 107 - -
Vian1g01107 438 CDD CIPK_C 309 421 - -
Vian1g01107 438 Gene3D Phosphorylase Kinase; domain 1 20 107 - -
Vian1g01107 438 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01107 438 FunFam Non-specific serine/threonine protein kinase 303 425 - -
Vian1g01107 438 FunFam Non-specific serine/threonine protein kinase 18 307 - -
Vian1g01107 438 Pfam NAF domain 305 361 IPR004041 GO:0007165
Vian1g01107 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vian1g01107 438 Gene3D Kinase associated domain 1, KA1 302 426 - -
Vian1g01107 438 SUPERFAMILY Protein kinase-like (PK-like) 25 295 IPR011009 -
Vian1g01107 438 Gene3D Transferase(Phosphotransferase) domain 1 108 286 - -
Vian1g01107 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 421 - -
Vian1g01107 438 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01107 Vian-Chr1 11907611 11908927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01107 10 434 CBL-interacting serine-threonine protein kinases AT4G30960 72.562 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian1g01107 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01107 - K07198 var:108321114 851.662