Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01104 ATGCAACCTTGTAGTAGAGAAATGCAAGGCGCTAACAATAACTCTCTCTTTAACCATGGTGGTAACAATCAGCAACAGATCCACTTTGATGCAACTTCAAACGAGGATTTCCTTAAGCAAATGCTCTCCAATCTCCCTTCATCTTCTCCATGGACACTCGACCCCAAACACAACCCCTTATGGGACCCTAATTCCGACGAAACCACGCCGGAAAACAACGTCGTTTTCCCCTACGACCTCGAACAGGCCAACTTGGCCTCCAAGTTTCGCAACCACCAAATCACCGATGACAAAGCCTCCGCTCTCATGCTCCAACATCACCATCAACTCCTTCTCTCCTCCGCCGCTGCCAATTCCCCCATCCTCCAAATGCCCGTCTCCTCTCTTAACGACGTTGTTCACGCCTCCTCCTTCAAATCTCCTGCTTCAAACGCTGACCCTGTTCAACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGTGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAACAGGGACAGAGTTTTGGAGCTTCGGCTCCGGCTACTGGTGGTGGCGCTGGTTCCGGGCAGCCGAAGCAGAGGGTTAGAGCGAGGAGAGGTCAAGCGACCGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATTGCAGAGCGAATGAAGGCGCTGCAGGAACTGGTTCCCAACGCCAACAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCTTCTGAGGGAGGCCCGGACTGCGTTCAACAAAAACGCAACAACACCAACGGAAACTCAAACGGCAACCATGCTTCTTCAAACGACACCCTCACCACGACGGAGCAACAGGTGGCGAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCCCTGGCCACCGCCATCTCCAAAGCCACGTGTCACACCAGAAACCCTTTCACCAACGGTGATGGGCCCTCTTCTCCCGGAATATCCGCGCTCACCCTGCACTCGTCCACTCTCAGTAACGGCCTCGTCAAAGACACCGCTTCCGTTTCCAAGTCCTGA 1125 0.5396 MQPCSREMQGANNNSLFNHGGNNQQQIHFDATSNEDFLKQMLSNLPSSSPWTLDPKHNPLWDPNSDETTPENNVVFPYDLEQANLASKFRNHQITDDKASALMLQHHHQLLLSSAAANSPILQMPVSSLNDVVHASSFKSPASNADPVQPLYNAFSASLQGAAQPSNQTHHFQLPQQGQSFGASAPATGGGAGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVLSMSRLGGAAAVAPLVADISSEGGPDCVQQKRNNTNGNSNGNHASSNDTLTTTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFTNGDGPSSPGISALTLHSSTLSNGLVKDTASVSKS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01104 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 262 IPR011598 GO:0046983
Vian1g01104 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 328 - -
Vian1g01104 374 MobiDBLite consensus disorder prediction 264 290 - -
Vian1g01104 374 MobiDBLite consensus disorder prediction 266 290 - -
Vian1g01104 374 Gene3D - 198 274 IPR036638 GO:0046983
Vian1g01104 374 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g01104 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 242 IPR036638 GO:0046983
Vian1g01104 374 MobiDBLite consensus disorder prediction 178 218 - -
Vian1g01104 374 MobiDBLite consensus disorder prediction 48 68 - -
Vian1g01104 374 MobiDBLite consensus disorder prediction 203 218 - -
Vian1g01104 374 Pfam Helix-loop-helix DNA-binding domain 212 239 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01104 Vian-Chr1 11860573 11863601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01104 183 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 55.450 2.26e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g01104 HLH 0.00028 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01104 - - gmx:100801457 416.772