Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01098 ATGCACCGAAGAGCCCCATTCCCTCGTCTCCTCCTCAATAATGTCTCATGTATGAGAAATGCACAGCAAATTCTGCGTCATGTGAATGTGTCTCTCCATGATGGAGGGGCGCTTGTGCTAACAGGCGCAAATGGCTCGGGGAAGACAACTTTCCTGCGTATGTTAGCTGGGTTTTCTCGTCCTTCTGCTGGCGAAATCCTTTGGAATGGCCATGACATACAACAATCTGCAATATTCCATCAGTATAAGCTTCAACTTAACTGGCTCTCTCTCAAGGACGCCATTAATGATAAGTTCACAGTTCTCAACAATGTACAATGGTTTGAACTTCTTGAGAACAAGGAAGGGAAGGCTTTGGCTGCAGTGGAATTGATGGGACTAGGAAAATTAGCTAATGAAAAACCAAGGATGCTTTCTATGGGCCAGCGTAAAAGACTACAACTTGCCAGGTTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCGGTTGCATTAGACGATGAAGGAGTAAAGTTACTTGAGTATATCATCGCAGAACATAGGAAACACGGAGGAATTGTGATTGTGGCGACTCATCTACCCATCGAGATAGAAGATTCCATGTTTTTGAAACTTCCACCTAGGTTTCCCAGGAGGATGACCCACGTGGATATGCTTGATCGGGCGGATATCAGTTAA 687 0.4541 MHRRAPFPRLLLNNVSCMRNAQQILRHVNVSLHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHDIQQSAIFHQYKLQLNWLSLKDAINDKFTVLNNVQWFELLENKEGKALAAVELMGLGKLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKHGGIVIVATHLPIEIEDSMFLKLPPRFPRRMTHVDMLDRADIS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01098 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 199 IPR027417 -
Vian1g01098 228 Pfam ABC transporter 25 165 IPR003439 GO:0005524
Vian1g01098 228 Gene3D - 5 206 IPR027417 -
Vian1g01098 228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 227 IPR003439 GO:0005524
Vian1g01098 228 SMART AAA_5 34 222 IPR003593 GO:0016887
Vian1g01098 228 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 222 IPR005895 GO:0017004|GO:0022857
Vian1g01098 228 NCBIfam heme ABC exporter ATP-binding protein CcmA 12 207 IPR005895 GO:0017004|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01098 Vian-Chr1 11785975 11786661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01098 23 177 Calmodulin-binding Proteins AT2G36910 27.485 9.17e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01098 - - gmx:100796586 416.387