LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g01090	ATGGCAACACTAACAAATCAATATTTTCTTCAACACTCTTCAATTCTCATCATTATCAAGATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCACCTTATTCTCTTTCAAATCTCAGTCCTTTGCAGATAACCCTTCATGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCAGACATCAAAGCCACGCTTTTCACTCACCTTTTATGTGCTTTTGCCTTCATAAACCCCACCACCTACAACATCTTCATCAACTCTTCCGAGGAGCACAAGTTCTCCACCTTCACCAACACGGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGCTGGCAGGGAGGACTCTTTGGTCTTCACCTCAATGCTAAATAGATCTTCTTACAGGAAACTTTTCATTGATTCTTCCATCAGAACAGCGAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGGGGCCAAGTTCCGAGGTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCCGAGGCAAGAAACTCTACCAAGCCAGAGTTGTTGTTAGTGATGGCAGGTTACTACCTTAAGGCTTCGGACTCCTTGAGTTACCCCTTCGATTCAATGCAGGAGAATTTGGATTGGGTGCATTTTGTGGCTTATGATTACTATCTCCCTAAGGTGGCCAATTCCACGGCTTTTCATGCGGCTTTGTATGGTTCATCTGATTGGGATAATACTGATTCTGGAATCAGAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTGATTGGGTTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCTGCAAACAGTGGCGTGGGAACACCAGCTTCAGGACCTGCCATTACAATGGATGGTTCCATGGGTTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGTTACAATGCAAGTTTTGTGGTGAACCAGTTCACCGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAAGTCATCAGGGCCAAAGTTTCTTATGCAAGGGAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGGGCAGCTCAAGCTGTAGATGAAGAATTTGAAGATCATCACAAGATGAGGTTGCTGATAATTGTTCTGCTTGCTACTCTGACTTTGGCCCTTCTGTTGGGAATAGTATTTTGCTACTACAACCCAGGGGCCGTAGCCACTGTTACCAAACTATTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATGGATGCAAACGGCTCTGATTTGACAGTATTCAGCTATCTCACTATTAAAGCGGCAACAAATAACTTCTCAAAAGATAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGAAAATTACGGAAGGGTCAGGAAAGAGCAGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAGTTCAAGAATGAAATCACACTTACAGCAAGACTACAGCATGTGAATTTAGTTAGACTTCTGGGATACTGCACAAAAAGGGACGAGAAAATTCTGATCTATGAATACCTGCAAAACAAAAGCTTAGATAATTTCCTCTTTGATCCAACGAAATCAATTCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCCAGTAATGTTTTACTAGATGACAATATGAATCCAAAGATATCCGATTTTGGCATGGCTAGAATTTTCAGAAAATATGACCTTGAAGCAAACACAGAAAGGATAGTTGGAACATATGGGTATGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCATGGATGAAGATATGACCCTTTTGGAATATGCATATGAACTGTGGAGGGAAGGAAGAGGTGTGGAGTTTGTTGAGCCTTCATTGGATGATAGAGCATCTCCTTGTAAAATCATGAGATGCATGCAGGTAGCTCTACTGTGTGTTCAGGAAAACTCTGTGGATAGACCTTCCATGTTGGAAGTTGATTCACTGCTGAAGAATGAAAGTGCAGTTATTGGTACTCCCAAAGTTCCTGCCTTTTCAGTTCAGAAACGTGAAGATGAGAAAGAAACATCTCATACCGGAGTCAATTTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA	2367	0.4166	MATLTNQYFLQHSSILIIIKMPSNLIVFCTFFLTLFSFKSQSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTTYNIFINSSEEHKFSTFTNTVKLQNPSVSTLLSIWAGREDSLVFTSMLNRSSYRKLFIDSSIRTARFYGFHGIDLTGAGPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASDSLSYPFDSMQENLDWVHFVAYDYYLPKVANSTAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANSGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEVIRAKVSYARENGLLGYNVFQVGNDENWELSIGAAQAVDEEFEDHHKMRLLIIVLLATLTLALLLGIVFCYYNPGAVATVTKLLYKLRYLPEAEKDMDANGSDLTVFSYLTIKAATNNFSKDNRLGEGGFGTVYKGKLRKGQERAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGMDEDMTLLEYAYELWREGRGVEFVEPSLDDRASPCKIMRCMQVALLCVQENSVDRPSMLEVDSLLKNESAVIGTPKVPAFSVQKREDEKETSHTGVNFYSINDVTISQLAPR	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g01090	788	Gene3D	Phosphorylase Kinase; domain 1	435	545	-	-
	Vian1g01090	788	FunFam	Uncharacterized protein	445	545	-	-
	Vian1g01090	788	ProSitePatterns	Protein kinases ATP-binding region signature.	476	498	IPR017441	GO:0005524
	Vian1g01090	788	Pfam	Protein tyrosine and serine/threonine kinase	472	737	IPR001245	GO:0004672\|GO:0006468
	Vian1g01090	788	Pfam	Glycosyl hydrolases family 18	54	376	IPR001223	GO:0005975
	Vian1g01090	788	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	49	392	IPR001223	GO:0005975
	Vian1g01090	788	CDD	STKc_IRAK	476	743	-	-
	Vian1g01090	788	SUPERFAMILY	(Trans)glycosidases	52	376	IPR017853	-
	Vian1g01090	788	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	591	603	IPR008271	GO:0004672\|GO:0006468
	Vian1g01090	788	FunFam	Uncharacterized protein	546	750	-	-
	Vian1g01090	788	SMART	serkin_6	470	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian1g01090	788	Gene3D	Glycosidases	64	377	-	-
	Vian1g01090	788	SUPERFAMILY	Protein kinase-like (PK-like)	454	757	IPR011009	-
	Vian1g01090	788	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	388	785	-	-
	Vian1g01090	788	CDD	GH18_plant_chitinase_class_V	47	382	-	-
	Vian1g01090	788	ProSiteProfiles	Protein kinase domain profile.	470	741	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian1g01090	788	SMART	2g34	49	376	IPR011583	GO:0008061
	Vian1g01090	788	Gene3D	-	277	347	IPR029070	-
	Vian1g01090	788	Gene3D	Transferase(Phosphotransferase) domain 1	546	750	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g01090	Vian-Chr1	11717000	11720177	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g01090	442	788	Receptor kinase-like Gene Family	AT4G11480	48.876	3.03e-114	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vian1g01090		Glyco_hydro_18	6.5e-50	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g01090	-		-	aprc:113847882	1224.54