Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01087 ATGGCCTCCGACATTTCGTTTGAAGACCTCAAAAACGAGAATGTGGATCTTGAACACATTCCTGTTGAAGAGGTTTTCAAGCAACTGAAATGTACCAAAGAGGGTCTCACATCTGCTGAAGGAGAAAAGAGACTTCAAATATTTGAGTTCATCTATAAACTGAGAAATTCTGAATTATCCTTAAAAGGTTTCCCTGAAAACTGCTTCAAGTTTCTCAACTTTCATGGTCACAAGAGGGTGTTGAGGGATGGAAAATGGAGCGAGGAGGAAGCTGCAATTTTGGTGCCAGGAGATTTGATCAGCATCAAGTTGGGAGATATTGTCCCAGCTGATGCCCGTCTTTTGGAGGGAGATCCCCTTAAGATTGATCAGTCTGCCCTCACTGGTGAGTCCTTGCCCGTCACCAAGAATCCTGGTAGTGAGGTCTTCTCTGGTTCCACCTGCAAACAAGGTGAAATAGAAGCTGTTGTCATTGCCACCGGTGTTCACACCTTCTTTGGCAAGGCTGCACATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAGAAGGTGTTGACTGCCATTGGAAACTTCTGTATCTGCTCAATTGCTCTGGGAATGTTGATTGAGATTATTGTGATGTATCCCATCCAGCAAAGGTCTTACAGAGAGGGCATTGATAATTTGTTGGTTCTTCTCATTGGAGGTATCCCAATTGCCATGCCAACTGTCTTGTCTGTCACCATGGCCATTGGGTCTCACCGTTTGTCTCAGCAAGGAGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGCATGGATGTTCTCTGCAGTGACAAGACCGGAACCCTCACTCTTAACAAGCTCACTGTGGATAAGAACTTGATTGAGGTGTTCCCCACTGGCATGGACAAGGATACCCTTGTCTTGTATGCTGCCAGGGCTTCCAGGACTGAAAATCAGGATGCCATTGATGCTTCAATCGTTGGAATGCTGAGTGATCCCAAGGAGATTGGCTTATCATTGTCAATGCTATCTTTTGTGGCATCTCAGGCAAGAGCAGGAATCGATGAGGTGCATTTTTTGCCCTTCAATCCTGTGGACAAGCGCACAGCTATCACTTACATTGATGCCCAAGGCAATTGGCACAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAGCTCTGTGGACTCAAGGGAGAGATTTTGAAAAAGGCCCATAAAGTCATTGATGAGTATGCTAACCGTGGTCTGCGTTCATTGGGTGTTTCACGCCAGACTGTTTCGGAAAAGAGCAAGGAGAATGAAGGAGACCCCTGGGAGTTCTTGGGTCTCTTGCCCCTCTTTGACCCTCCAAGGCACGATAGTGCTGAGACTATTCGACGTGCTCTTGACCTTGGAGTCAATGTTAAGATGATCACTGGTGATCAACTTGCCATTGGAAAAGAAACTGGTCGCAGGCTTGGAATGGGCACCAACATGTACCCTTCATCCTCTCTTCTTGGTGACTGCAAGGACCCAACCATTGCATCAATCCCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCCGAGCACAAGTATGAGATTGTGAAGAGGTTGCAAGATAGAAAGCATATTTGTGGAATGACTGGAGATGGTGTGAATGATGCCCCAGCGCTGAAGAAGGCAGACATTGGTATTGCCGTTGCCGATGCCACTGATGCAGCGAGAAGTGCCTCAGACATTGTCCTGACCGAGCCCGGACTCAGTGTGATCGTGAGTGCTGTTTTGACCAGCAGAGCCATCTTCCAGAGAATGAAGAATTACACAATCTACGCTGTTTCCATCACCATCCGTATTGTGTTTGGATTCATGCTCGTTGCTCTAATATGGAAGTTCGACTTCTCCCCTTTCATGGTCCTCGTCATCGCCATCTTGAACGATGGAACCATCATGACAATCTCCAAGGATAGGGTGAAGCCTTCTCCTCTTCCCGATTCATGGAAGCTGAAAGAAATATTCGCCACTGGTATTGTTCTTGGAGCTTACATGGCCATCATCACTGTTGTCTTTTTCTTTTTGGTTCATGACACCGATTTCTTCACCGTAAGTGCTATTCACTATTCAAACAATAGACAACTTATCACATATAACTCTGACATGACATACCATGATGTTTTTTCCCTTCAGAGAACCTTTGGTGTTAAGCCAATTGCAGACAGTGAGGAGCAGCTTAACTCAGCCCTCTACCTTCAAGTGAGTATCATTAGCCAAGCACTCATCTTCGTCACCAGGTCAAGGAGTTGGTCTTATGTTGAACTCCCTGGAATTTTGCTTATCACAGCCTTCTTTGCTGCTCAATTGGTGGCCACTGTGATTGCTGTGTATGCACACTGGGACTTTGCTAGAATCAATGGAGTTGGTTGGGGATGGGCAGGAGCAATATGGGTCTTCAGCATTGTTACCTACATTCCTCTTGACATCCTCAAGTTCCTCATCCGGTTGGGACTGTCGGGCAAGGCTTGGGACAACATGCTTGAGAACAAGACTGCTTTCACTACAAAGAAAGACTACGGAAAGGGAGAAAGGGAAGCTCAATGGGCCATGAATCAGCGCACACTTCATGGTCTCCAAGTAGGAGAAACCAAGGTCAACCACGAGCAGTCTGAAATAGCAGAGCAAGCTAGAAGACGTGCTGAGGCTGCCAGGTTGAAGGAGCTCCACACACTGAAGGGACATGTTGAATCTGTGATGAAGTTGAAGGGTATTGATATTGATACCATTCAACAACACTACACTCTATAA 2793 0.464 MASDISFEDLKNENVDLEHIPVEEVFKQLKCTKEGLTSAEGEKRLQIFEFIYKLRNSELSLKGFPENCFKFLNFHGHKRVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGSEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIALGMLIEIIVMYPIQQRSYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFPTGMDKDTLVLYAARASRTENQDAIDASIVGMLSDPKEIGLSLSMLSFVASQARAGIDEVHFLPFNPVDKRTAITYIDAQGNWHRSSKGAPEQIIELCGLKGEILKKAHKVIDEYANRGLRSLGVSRQTVSEKSKENEGDPWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDCKDPTIASIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGAYMAIITVVFFFLVHDTDFFTVSAIHYSNNRQLITYNSDMTYHDVFSLQRTFGVKPIADSEEQLNSALYLQVSIISQALIFVTRSRSWSYVELPGILLITAFFAAQLVATVIAVYAHWDFARINGVGWGWAGAIWVFSIVTYIPLDILKFLIRLGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWAMNQRTLHGLQVGETKVNHEQSEIAEQARRRAEAARLKELHTLKGHVESVMKLKGIDIDTIQQHYTL 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01087 930 Gene3D - 881 930 - -
Vian1g01087 930 Gene3D - 78 160 - -
Vian1g01087 930 SUPERFAMILY HAD-like 269 593 IPR036412 -
Vian1g01087 930 NCBIfam HAD-IC family P-type ATPase 78 292 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 NCBIfam HAD-IC family P-type ATPase 521 632 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 Pfam E1-E2 ATPase 79 252 - -
Vian1g01087 930 Coils Coil 930 930 - -
Vian1g01087 930 CDD P-type_ATPase_H 79 827 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian1g01087 930 SFLD Haloacid Dehalogenase 255 598 - -
Vian1g01087 930 Gene3D - 161 801 - -
Vian1g01087 930 PRINTS P-type cation-transporting ATPase superfamily signature 441 452 - -
Vian1g01087 930 PRINTS P-type cation-transporting ATPase superfamily signature 546 565 - -
Vian1g01087 930 PRINTS P-type cation-transporting ATPase superfamily signature 569 581 - -
Vian1g01087 930 PRINTS P-type cation-transporting ATPase superfamily signature 273 287 - -
Vian1g01087 930 PRINTS P-type cation-transporting ATPase superfamily signature 123 137 - -
Vian1g01087 930 PRINTS P-type cation-transporting ATPase superfamily signature 463 473 - -
Vian1g01087 930 FunFam Plasma membrane ATPase 76 160 - -
Vian1g01087 930 SUPERFAMILY Calcium ATPase, transduction domain A 78 173 IPR008250 -
Vian1g01087 930 PANTHER CALCIUM-TRANSPORTING ATPASE 78 869 - -
Vian1g01087 930 NCBIfam plasma-membrane proton-efflux P-type ATPase 77 792 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian1g01087 930 Gene3D - 285 446 IPR023299 GO:0000166
Vian1g01087 930 Gene3D - 270 583 IPR023214 -
Vian1g01087 930 FunFam Plasma membrane ATPase 440 594 - -
Vian1g01087 930 PRINTS H+-transporting ATPase (proton pump) signature 403 421 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 PRINTS H+-transporting ATPase (proton pump) signature 518 534 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 PRINTS H+-transporting ATPase (proton pump) signature 577 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 PRINTS H+-transporting ATPase (proton pump) signature 546 562 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 PRINTS H+-transporting ATPase (proton pump) signature 746 767 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01087 930 Pfam haloacid dehalogenase-like hydrolase 269 560 - -
Vian1g01087 930 SFLD p-type atpase 255 598 IPR044492 -
Vian1g01087 930 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 831 IPR023298 -
Vian1g01087 930 ProSitePatterns E1-E2 ATPases phosphorylation site. 275 281 IPR018303 -
Vian1g01087 930 FunFam Plasma membrane ATPase 285 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01087 Vian-Chr1 11689135 11699296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01087 1 94 Primary Pumps ATPases AT3G42640 48.421 8.12e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01087 K01535 - gmx:100798717 1447.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01087 1 11689135 11699296 Vian1g01087 1 11689135 11699296 ECH