Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01085 ATGAAGCCACAGAAACTCACCGACTATGAGCTCCAGCGGCTCCAGAACATTCGCCGGAACAATGAGATGATGGCAGCCCTCAAACTCCATTCCAAAGCCACCCAACTCTCCAATTTCAAGCGTCAAAGAGTTGAAGCCAAATCCACCCGCGTGAAATTGGAAAAGAAACCTAAAACCGAAATCCCAATTAAAATCGAAACCCCAATTAAAACCGAAACCCCAATTGTCATCAGTGTCAGACGCTCCCTGCGAACCAGAGGTATTCCACCAGATTGTGAGGGTCTTAACAGAGATTCCGTGGCCCCCACCACTCGCTCCAAAGAAACACCACCTTCCGTCTCCACCACTCGCTCCAAAGGAAAACCACCTTCCGTCTTAAGTTTGGGTCCCCTTTCCATGGCCACTGCTCGTGCAAGCGCTCACTCTGATAGTTCATTCACTGAGTCGCTAATGGGTATGGCCCAAGATGTCAGTGTTCCAAAAGGGAATGCGGGGGATTCCCTTGAATTGGAATCTCTGTCTCTGGATTCCGACAATATTGCGCGGGTTGTTTCTGGAAGGATTACCAATGTCAGGTTTTTTCCTACCAACAGTGTCAAAATGATTGCCGCGGGTAACAAGTTTGGGAATATTGGGTTCTGGAATATGGGAGAAAGTGAGGTTCATTTATACCGTCCTCATAATGCTCCCATTTCTGGGATTTTGATTCAATCACATTGTTGTTCAAAGATATACACAAGTTGCTATGATGGAGTTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTGTTTGAGAGTGATGAAACAATATATGCTCTTTCTCAACCCCCAAATGAGACAAACTGCCTATATTTTGCTGAGGGTTCTGGAGGTTTGACTATGTGGGATAACAGGGTGGGAAAACGTTCGTCGCACTGGGGTTTGCATGACAGTAGGATTAACACGATAGATTTCAACTGTCAAAACCCTCACATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGATTTGAGATGTACTAATAGGAATGACCTCACAGCTTTGAGGACATTTACCCACAAAAGATCTGTTCAATCTGCTTACTTCTCTCCTTCTGGAGGTAGCCTTGCAACTACAAGCTTCGACAACACTATTGGAATTTACAGTGGAGTTAACTTGGAGGATACGGCTGTTATTTCTCATTTCAATCAGACTGGCAGATGGATTTCTTCATTCAGAGCGAAATGGGGTTGGGATGACAAATATCTCTTCATTGGAAATATGAATAGAGGGGTTGATGTGGTTTCAGCAGTTCAAAGGAAAATAGTTATGACGTTAGAAAGCCCACACATGTCTGCCATTCCTTGCAGATTCGATATAAACTCTTACGAGGTTGGGATGCTTGTAGGAGCTACAAGTGGAGGCCAGCTTTATGTCTGGACATCACGCTAG 1449 0.45 MKPQKLTDYELQRLQNIRRNNEMMAALKLHSKATQLSNFKRQRVEAKSTRVKLEKKPKTEIPIKIETPIKTETPIVISVRRSLRTRGIPPDCEGLNRDSVAPTTRSKETPPSVSTTRSKGKPPSVLSLGPLSMATARASAHSDSSFTESLMGMAQDVSVPKGNAGDSLELESLSLDSDNIARVVSGRITNVRFFPTNSVKMIAAGNKFGNIGFWNMGESEVHLYRPHNAPISGILIQSHCCSKIYTSCYDGVLRLMDAEKEIFDLVFESDETIYALSQPPNETNCLYFAEGSGGLTMWDNRVGKRSSHWGLHDSRINTIDFNCQNPHIVATSSSDATACTWDLRCTNRNDLTALRTFTHKRSVQSAYFSPSGGSLATTSFDNTIGIYSGVNLEDTAVISHFNQTGRWISSFRAKWGWDDKYLFIGNMNRGVDVVSAVQRKIVMTLESPHMSAIPCRFDINSYEVGMLVGATSGGQLYVWTSR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01085 482 SMART WD40_4 302 342 IPR001680 GO:0005515
Vian1g01085 482 SMART WD40_4 217 257 IPR001680 GO:0005515
Vian1g01085 482 SMART WD40_4 350 388 IPR001680 GO:0005515
Vian1g01085 482 Gene3D - 179 482 IPR015943 GO:0005515
Vian1g01085 482 PANTHER UNCHARACTERIZED 4 481 - -
Vian1g01085 482 SUPERFAMILY WD40 repeat-like 184 479 IPR036322 GO:0005515
Vian1g01085 482 MobiDBLite consensus disorder prediction 86 129 - -
Vian1g01085 482 FunFam WD repeat-containing protein 76 179 481 - -
Vian1g01085 482 MobiDBLite consensus disorder prediction 99 122 - -
Vian1g01085 482 Coils Coil 36 56 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01085 185 433 U-box Gene Family AT1G04510 21.887 6.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01085 K24755 - gmx:100800122 697.967