Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01083 ATGCCTGACGGAGAGTCCTCGGCTGTGGTGGGCGACCAACCCTCCATGGACCCTTCTTTAAGTCTCTCCAATCAACAACTGTTCCTCGGTCTTTCCCAAGTTGAACTTGACGATGACACAGTCAAGAAAGATCCCCGAAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTATATTTAGGGACAGGGTGTGGGAAAACTCATATTGCTGTGCTTCTTATGCATGAAATGGGCCATTTGATTCGTAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTTGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTTGGAATTTTCTGTGGAAGTTCCAAGCGCTTGAAACGGCATCAAGACTGGGAACAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTAGTGCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAATTTTCTACAATAGTAATTCTTCAAAGGTTCCTCGTATATTTGGCATGACCGCATCCCCTGTTGTCGGAAAAGGAGGGAAGGGGTGGGAGAGGAAGAGAGGTCCGCTTGTTTTCTATGGTTTAAGGGGTGGAGTGGAAAATGTCACTTTGTTTGGTTCATTAGGAGCTTCTAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATTTGTGACCACTCCTGTAATTAATATATATCACTATGCTTCAACTGCAAGTGGGGAAACTAGCATGTACTTGAAAATTGAAGAAATTAAACGCCAGTGCATAGCAACCCTTGGTAGAAGTTCAGAAGATCACCAGAAACTGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAAGGCATGAATTGGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAGGTTGCTGAACTATTTACTTCACAGTGCATTAAAGGTGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTCTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGACTGCGAGATCCCTATCATACATACTTCAGAAGCTCAAGCTTCTTAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGTTGAAGAGTATGTCCCGTAAAACCATGAACATGATTCTTGACAAGTTTCGCTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTCGTAATAAGAAGGAGCTTGACATAATTGATGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACATTCATTATCCCTGAGGAAAATATTTTCAGAGTTGAGTCGACTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCCTTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTACTTCTTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCACCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGTCTGAAAGCAATAGAAGAACTATATAAATTAGGTGCTTTAAGTAATTTTCTCTTGCCAAAGGAAGATGATGCAGCGCCAGAAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGGGAATTACATGAGATGCTGGTTCCTTCTGCCTTTGGTCAGTCATGGACAAACAAGGATGAAATCGTCCATCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGTGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTACATCTTGCTCATGGTCGATCCGTGATGACAAAATTTCTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTGCCGAGACTGTAGACTTGGGTTTGACTGCTGAAGCTGAGACAAGCTCATCGACCTTCTACCTTTTGCTTCCGGTCGTACTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGTCTTTGGTCACCAATCTTCAGGCATCCACAATATACTATGGACAAAAGAAAAATCCCTTTTGATATTCACCTGCAGCTTGCCAATGGTTACAAAAGTGTAAGAGATGTGGAGAATAGTTTAGTGTATGCACCACATAAAAGGACATTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCTTCATAAAGAATCAGGCACTTCAAGCTACGCGGATGACTTAATTGAAAAGTTTTCCATTCATCTCAAATACCCAAAACAACCACTTCTGCATGTGAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAAGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCCGAGCTATGTGAACTGAAAATAATAGGCTTTTCGAAGGATATTGGTAGTTCCATATCTTTGCTACCCTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCCGAAGTTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCGTGCATGACAGCTTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTGGGCGCAATTTGCAGATCTATATATGCGATCAGATATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAAGAATTTGTTGTAAAGAAACTGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAAGAGCAAGGAAAAGTAACTGAAAACCGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAGTTGCCTTTCTTACTTGGATTGGCATACAAGTTGGTTTTGAAGCTTTACAAGTGGTTGATATTTGCATAGCAAGTGCTGGCTATTTCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTACATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATATCTTTTATGTGATTCAAATGGATTGTCTGAGGCGATAAAAAAGTATGTAGACTACGTTCGAAGTCCTTCAACAGATAGTGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACGTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGAAAATTATGACTTCGTTCTTGGATCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCATCAAAACTGACTAAAACGTTTACAGTTGAAGCGAAAGCAAGTGGGAATAATGTATGTGAAACAGCTTCAGCGACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCACTGATACTTTTTTCAAAGTTCAAGGCTCAAGGGTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACTGATACCAATACTGCCAAGCATATAATGGTAACTGCAGATTTGTACAGCAAATCAAACCCAGAAATTCGACGTATCCCAAATACAGATGAAATATGCTCTCCATGCGTGAAACGTGTTGGTCAAGTGCTTCAATCTTCTATGAGGGAAAAGCTCAGTGAAATATCTGAAAATCATTGCAGTAGTGAATCATCAGGGGCAGGAACTTCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGCTCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGGTCCCTGATACGATTTTAGAGTTTGTTGGCGAACCTCGGTCAAAAAAGAAAGATGCTGCAGAGAGTGCGGCTCAGGGTGCATTTTGGTACCTGCAACAGGAAGGCTACTTTGCCTAG 4956 0.4023 MPDGESSAVVGDQPSMDPSLSLSNQQLFLGLSQVELDDDTVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGIFCGSSKRLKRHQDWEQEIGQYEVLVMTPQILVHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAVIMKIFYNSNSSKVPRIFGMTASPVVGKGGKGWERKRGPLVFYGLRGGVENVTLFGSLGASSEANLARSINSLEHMLDAKVYSVEDKELKSFVTTPVINIYHYASTASGETSMYLKIEEIKRQCIATLGRSSEDHQKLMNTKKLLNRMHDNVVFCLQNLGIWGALQRHELVEAEGNSSDDSVCDTYLAQVAELFTSQCIKGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRKTMNMILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSRNKKELDIIDGFEKDEYRMNMEVTFRTSDETFIIPEENIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKLGALSNFLLPKEDDAAPEEQVSGSTDEDECEDAISRGELHEMLVPSAFGQSWTNKDEIVHLNSYYIKFCPCPVDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFLPFGVVEFDKDEIKMAEKFQEMFLKIILDRLEFVAETVDLGLTAEAETSSSTFYLLLPVVLQEYGNAMKVDWKTVKRCLWSPIFRHPQYTMDKRKIPFDIHLQLANGYKSVRDVENSLVYAPHKRTFYFVTNIDYEKTGFSLHKESGTSSYADDLIEKFSIHLKYPKQPLLHVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSALRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLVHDSFHEGDLTKRRSNAVNNSNLLKLAIGRNLQIYICDQIFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTENRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAVAFLTWIGIQVGFEALQVVDICIASAGYFPLSSDVDIPSLESKLGHQFLHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKYLLCDSNGLSEAIKKYVDYVRSPSTDSGIKEGPKCPKALGDVVESCVGAILLDTGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLPVPSKLTKTFTVEAKASGNNVCETASATGQNKKEACRIASLILFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIMVTADLYSKSNPEIRRIPNTDEICSPCVKRVGQVLQSSMREKLSEISENHCSSESSGAGTSRSRLYELCAAYCWKPPSFECCKEEGPAHLKQFTYKMTLEIEEVPDTILEFVGEPRSKKKDAAESAAQGAFWYLQQEGYFA 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01083 1651 SUPERFAMILY RNase III domain-like 1227 1391 IPR036389 GO:0004525|GO:0006396
Vian1g01083 1651 CDD DSRM_DCL_plant 1577 1646 - -
Vian1g01083 1651 Pfam Helicase conserved C-terminal domain 424 530 IPR001650 -
Vian1g01083 1651 CDD DEXHc_dicer 47 276 - -
Vian1g01083 1651 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g01083 1651 PANTHER DICER-RELATED 62 1470 - -
Vian1g01083 1651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 544 IPR027417 -
Vian1g01083 1651 Gene3D Ribonuclease III domain 1226 1396 IPR036389 GO:0004525|GO:0006396
Vian1g01083 1651 SUPERFAMILY dsRNA-binding domain-like 1573 1649 - -
Vian1g01083 1651 Gene3D - 1577 1646 - -
Vian1g01083 1651 Gene3D Dicer dimerisation domain 592 688 IPR038248 -
Vian1g01083 1651 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1399 1467 IPR014720 -
Vian1g01083 1651 Gene3D - 405 566 IPR027417 -
Vian1g01083 1651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Vian1g01083 1651 SMART ultradead3 45 245 IPR014001 -
Vian1g01083 1651 Pfam Ribonuclease III domain 1263 1372 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 Pfam Ribonuclease III domain 1056 1187 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Vian1g01083 1651 CDD RIBOc 1041 1197 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1570 1646 IPR014720 -
Vian1g01083 1651 Gene3D - 49 226 IPR027417 -
Vian1g01083 1651 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1571 1645 - -
Vian1g01083 1651 Pfam Dicer dimerisation domain 596 680 - -
Vian1g01083 1651 Gene3D paz domain 885 989 - -
Vian1g01083 1651 FunFam Endoribonuclease dicer-like 1 1222 1393 - -
Vian1g01083 1651 Gene3D Ribonuclease III domain 1021 1198 IPR036389 GO:0004525|GO:0006396
Vian1g01083 1651 ProSiteProfiles Ribonuclease III family domain profile. 1018 1187 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 SUPERFAMILY RNase III domain-like 1040 1201 IPR036389 GO:0004525|GO:0006396
Vian1g01083 1651 SMART PAZ_2_a_3 867 1017 IPR003100 GO:0005515
Vian1g01083 1651 Gene3D - 1397 1476 - -
Vian1g01083 1651 SUPERFAMILY PAZ domain 887 989 IPR036085 GO:0005515
Vian1g01083 1651 Pfam PAZ domain 890 1012 IPR003100 GO:0005515
Vian1g01083 1651 CDD RIBOc 1244 1394 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 SMART helicmild6 442 532 IPR001650 -
Vian1g01083 1651 SMART riboneu5 1243 1395 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 SMART riboneu5 1040 1207 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 CDD DSRM_EIF2AK2-like 1398 1465 - -
Vian1g01083 1651 ProSiteProfiles Ribonuclease III family domain profile. 1228 1372 IPR000999 GO:0004525|GO:0006396
Vian1g01083 1651 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 596 686 IPR005034 GO:0016891
Vian1g01083 1651 SUPERFAMILY dsRNA-binding domain-like 1354 1465 - -
Vian1g01083 1651 FunFam Endoribonuclease Dicer 46 226 - -
Vian1g01083 1651 FunFam Endoribonuclease dicer-like 1 591 687 - -
Vian1g01083 1651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 582 IPR001650 -
Vian1g01083 1651 ProSiteProfiles PAZ domain profile. 891 991 IPR003100 GO:0005515
Vian1g01083 1651 SMART DRBM_3 1571 1645 IPR014720 -
Vian1g01083 1651 SMART DRBM_3 1400 1466 IPR014720 -
Vian1g01083 1651 FunFam Endoribonuclease dicer-like 1 403 566 - -
Vian1g01083 1651 ProSitePatterns Ribonuclease III family signature. 1263 1271 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01083 Vian-Chr1 11571011 11588554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01083 430 529 Eukaryotic Initiation Factors Gene Family AT1G72730 31.000 2.38e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01083 K11592 - gmx:100818702 2781.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01083 1 11571011 11588554 Vian1g01083 1 11571011 11588554 ECH