Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01071 ATGGGTTCCTCCTCTAGTAGACCCGCCACTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTCATTTAGCAAGAAATTTTGATGGTGAAATTCATAAAGTCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCACCTGATATGAGAACGGAATTCCATGGGAATACTAGTGCTGGATGTTCTTATCGAAACGTTGCAACACAGAGTCAGAGGAACTGCTTGTCTGAACACGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTCCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTGTGCAAATGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTTGTTAGAGGTGGTGTCTCTCAAGTCTCTCAGGAGACAGTGCATCAAAGAAGTTCATCCCCTCAGGAGCATGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGACCAGAAGAAGAACCATGCCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGAACAGGAAATGATAGTGTGCTTCAAGTTGACGTGGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGACGCCAGAAGGAACGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACCGGAGGTGCCGATGATCCTGGATCTCAAGATCGATGGCTAGTTGATTTCGGTGGTGATTTGTCAAATGATGGAGTTGGAGGTGCTTCTGCATATATGGGCAGCAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGCGGCTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCGCTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGATGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGTCTCCACGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGCCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCACTGA 1623 0.451 MGSSSSRPATRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVHLARNFDGEIHKVTEESSLSCTEARISCSPPAETSTSPDMRTEFHGNTSAGCSYRNVATQSQRNCLSEHEEQAPPCQVSAGHSGRESYSDSSNTASTPFVAQQSSDPVCANVSANKDVVNDVNNPVVRGGVSQVSQETVHQRSSSPQEHVNFSSGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMADGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01071 540 MobiDBLite consensus disorder prediction 125 152 - -
Vian1g01071 540 MobiDBLite consensus disorder prediction 182 202 - -
Vian1g01071 540 MobiDBLite consensus disorder prediction 132 152 - -
Vian1g01071 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 525 IPR013083 -
Vian1g01071 540 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Vian1g01071 540 MobiDBLite consensus disorder prediction 227 248 - -
Vian1g01071 540 SMART ring_2 479 520 IPR001841 -
Vian1g01071 540 SUPERFAMILY RING/U-box 469 524 - -
Vian1g01071 540 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Vian1g01071 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Vian1g01071 540 Pfam Ring finger domain 478 521 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01071 Vian-Chr1 11444881 11447809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01071 354 525 C3H Transcription Factor Family AT5G45290 47.396 1.31e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01071 - - gmx:100783722 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01071 1 11444881 11447809 Vian1g01071 1 11444881 11447809 ECH