Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01069 ATGAATATAAAAAAGAAAACTAGGTGGGATGACAATATGATAGTGCAAGTTCCAGTTGCTGAATTGAACGTGCAACTTGGCCACCAGTGCTGTGTTGACACCATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATATAGAGAAAAACGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCAGATGGACAACAGGGAAAAAGACTCTTCCTTTAGAACCCCCACTGACCAGATCAGTGTTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGGATACAGAAACTGTGGACAAAAAGCAGAACCTGATGAACTTTGTTCCTACTCTTCGGTCTGGTGAATGGAGTGATATTGGAGAACGCCCTTCCATGGAGGATACACACATATGCATTGGAGATTTGGCCAAAAAATTTGGCAATAACGAACTTTCTGAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGTGCTGCACAGTCTTTACTTGTAGCCAATGCCGGAGACTGTCGTGCCGTGTTATCCCGTTGTGGCCGAGCCGTAGAAATGTCCAAAGATCACAGACCATTGTGCATGAAAGAAAGGATGAGGATTGAGTCTGTAGGTGGATACATAGATGATGGTTACCTGAATGGCCAGTTAGGTGTGACTCGTGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGAGATGAATGGAAAACATGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAGTTTTTGATAATTGGGAGTGATGGAATATGGGATGTTTTTCGCAGCCAGAATGCAGTGGACTTTGCTCGAAGGAGGCTGCAAGAACACAATGATGTCAAGCAGTGTTGCAGGGAGATAATAGGAGAAGCAATAAAGAGAGAAGCAACAGACAATTTGACAGTGGTGATGGTGTGTTTTCACTCAGAACCACCACCTTCTGTGGTAGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAACCTTAAATGCTTGCTAGAAGGATAA 1071 0.4388 MNIKKKTRWDDNMIVQVPVAELNVQLGHQCCVDTMCVQEGEQVGEDIEKNVDNRRVSWPLHCDLLHAQMDNREKDSSFRTPTDQISVANSFPLESICEDTETVDKKQNLMNFVPTLRSGEWSDIGERPSMEDTHICIGDLAKKFGNNELSEEAISFYGVFDGHGGKSAAQSLLVANAGDCRAVLSRCGRAVEMSKDHRPLCMKERMRIESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKHGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCREIIGEAIKREATDNLTVVMVCFHSEPPPSVVVERPRVRRSISAEGLQNLKCLLEG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01069 356 SMART PP2C_4 107 321 IPR001932 -
Vian1g01069 356 SUPERFAMILY PP2C-like 108 325 IPR036457 -
Vian1g01069 356 Gene3D - 172 327 IPR036457 -
Vian1g01069 356 Gene3D - 105 171 IPR036457 -
Vian1g01069 356 PANTHER PROTEIN PHOSPHATASE 2C 104 171 IPR015655 GO:0004722|GO:0006470
Vian1g01069 356 ProSiteProfiles PPM-type phosphatase domain profile. 117 323 IPR001932 -
Vian1g01069 356 CDD PP2Cc 117 323 IPR001932 -
Vian1g01069 356 ProSitePatterns PPM-type phosphatase domain signature. 156 164 IPR000222 GO:0043169
Vian1g01069 356 Pfam Protein phosphatase 2C 170 315 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01069 Vian-Chr1 11429370 11432570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01069 169 356 PP2C-type Phosphatase Gene Family AT2G25620 63.158 6.05e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vian1g01069 PP2C 3.1e-44 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01069 K14803 - gmx:100782648 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01069 1 11429370 11432570 Vian1g01069 1 11429370 11432570 ECH